Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I12
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    31   0.77 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +1

Query: 373 PLPPXNXXFWPPXXXXPPPXXXEKXXFXXFFFXPPPPLXXRXXXXAXGGXP 525
           P PP +   WPP    PPP              PPPP   R      GG P
Sbjct: 287 PPPPPSSGMWPP---PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 334


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/51 (33%), Positives = 18/51 (35%)
 Frame = +1

Query: 373 PLPPXNXXFWPPXXXXPPPXXXEKXXFXXFFFXPPPPLXXRXXXXAXGGXP 525
           P PP +   WPP    PPP              PPPP   R      GG P
Sbjct: 297 PPPPPSSGMWPP---PPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMP 344


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +1

Query: 379 PPXNXXFWPPXXXXPPPXXXE-KXXFXXFFFXPPPPLXXRXXXXAXGGXP 525
           PP +    PP    PPP     +      FF PPPP   R       G P
Sbjct: 323 PPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDGGP 372


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = +1

Query: 379 PPXNXXFWPPXXXXPPPXXXE-KXXFXXFFFXPPPPLXXRXXXXAXGGXP 525
           PP +    PP    PPP     +      FF PPPP   R       G P
Sbjct: 323 PPPHFGMGPPRGFMPPPHPMMFRGGPYPPFFPPPPPHFMRPSSPPTDGGP 372


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,313
Number of Sequences: 27780
Number of extensions: 245169
Number of successful extensions: 520
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)