Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I10
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    29   1.0  
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    27   3.1  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   3.1  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.4  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    26   7.1  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -1

Query: 343 STSP*TRRLGSS*STNGAFRYSKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGS 164
           +T+P  R++  + STN     +K  S      SL   G+   +    + L  + D L   
Sbjct: 235 TTNPLIRKVSFTGSTNVGKILAKQSSSTLKKLSLELGGNAPFIVFEDADLEKAADALMAC 294

Query: 163 RFRSGGRFC 137
           +FR  G+ C
Sbjct: 295 KFRGSGQTC 303


>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +3

Query: 234 FVASDGFDENGDRCLEYLKAPLVDQEDPRRRV*GDVDCFPFCPQDRECSYRRP 392
           F+   G     D  +E L      +    RR+   + CFP+  QD++   R P
Sbjct: 56  FILQTGCGSINDHLMELLIMINACRSASARRITAIIPCFPYARQDKKDKSRAP 108


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 259 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 119
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 449 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 336
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 154 SGGRFCEARLLLGFVLATSSGLSPVSSPTKVKA 56
           S G F +A   +   LA +SGLS + + T VKA
Sbjct: 449 SMGAFADALDTIPLALAENSGLSSIEALTAVKA 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,439
Number of Sequences: 5004
Number of extensions: 53338
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)