Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I09
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    42   1e-04
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    32   0.082
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.4  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    26   7.1  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 646 PLIRPCRCTGDVSAVHHDCLSRWLVESAASPDGLKCKVCNTPY 518
           PL  PC+CTG +  VH +CL  WL  S  +     C++C   +
Sbjct: 20  PLFHPCKCTGSIRYVHQECLVEWLGHSKKT----HCELCKAKF 58


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
 Frame = -3

Query: 691 SSXXCWXCYD-------SSRAEPLIRPCRCTGDVSAVHHDCLSRWLVESAASPDGLKCKV 533
           SS  CW CY+       S   +   RPCRC+      H  CL  ++  S ++    +C  
Sbjct: 10  SSARCWICYEEYDKKLCSLSNDSWRRPCRCS---LIAHESCLISYITRSGST----RCPQ 62

Query: 532 CNTPY-IVQETNRVEW 488
           C T Y I +      W
Sbjct: 63  CLTAYRIAKPPKEKSW 78


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -3

Query: 679  CWXCYDSSRAEPLIRPCRCTGDVSAVHHDCLSRWLVESAASPDGLKCKVCNTPY 518
            C  CY     E  +   RC       H  CL +W   S +S    +C +C + +
Sbjct: 1558 CAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSS----RCPLCRSSF 1607


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 687 LEPTLSTNEFLSTFLASWWCCPNXSANLAXSNCLAN 794
           LE   S++++L T ++ WW      ANL     ++N
Sbjct: 197 LEALPSSHQWLLTVMSFWWAIGQVIANLVSWGLISN 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,137
Number of Sequences: 5004
Number of extensions: 33834
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)