Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I09
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.15 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 568 SAASPDGLKCKVCNTPYIVQETNRVEWE 485
           S A+P G KC +  TP I +E   +E++
Sbjct: 275 SPATPKGSKCSMITTPEIKKEVEDMEYD 302


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 517 IVQETNRVEWERGFTW 470
           I+Q T    W RG TW
Sbjct: 14  IIQGTQAQHWSRGNTW 29


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 517 IVQETNRVEWERGFTW 470
           I+Q T    W RG TW
Sbjct: 14  IIQGTQAQHWSRGNTW 29


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 774 TPSLPTCXGSTTTMP 730
           TP+  T  G+TTT+P
Sbjct: 215 TPATVTTTGATTTLP 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,695
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)