Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I05
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    27   4.4  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   5.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    26   7.6  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   7.6  

>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 265 RPRGGAACLVVVLTAGTPLL*PGFDPGRR 179
           RP GGA C+ +++    P++   F+PG R
Sbjct: 158 RPTGGAGCVALLVGPNAPIV---FEPGLR 183


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 195 KPGQSRGVPAVNTTTRHAAPP--RGRPTDGSSRR*STTND 308
           KP  S+   A NTT+R   PP  R R   G++    TT+D
Sbjct: 445 KPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSRTTSD 484


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 259 EDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPG--YPAGPEP 393
           E A+P   R  + +P  SVSA++++   +P  A       YP+ P P
Sbjct: 212 EGAKPPFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAP 258


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +3

Query: 129 RAHPLNDSPALLHPASDLRPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSSRR 290
           R  PLN SP+ L P S+         + G+    + T    PP  R T G + R
Sbjct: 337 RRSPLN-SPSQLDPISNENESDTDDSNTGLRNRTSPTAAPPPPSRRKTGGLNTR 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,530
Number of Sequences: 5004
Number of extensions: 40915
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)