Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_I05
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 35 0.092
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 33 0.28
06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674... 32 0.49
05_01_0570 + 5061600-5062142,5062790-5062972 31 0.86
03_03_0023 + 13839421-13840326 31 1.5
04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103 30 2.0
09_04_0434 - 17533633-17534637 29 4.6
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 29 4.6
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 4.6
10_08_0256 + 16252773-16253005,16253309-16253396,16253525-162535... 29 6.1
07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786 29 6.1
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 29 6.1
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 29 6.1
04_04_1330 - 32700333-32700770 29 6.1
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 29 6.1
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 28 8.0
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 34.7 bits (76), Expect = 0.092
Identities = 27/81 (33%), Positives = 38/81 (46%)
Frame = +3
Query: 36 SYEVPAPRGRAGYVRLNDLQVLRADRGPKEFRAHPLNDSPALLHPASDLRPGSKPGQSRG 215
S + P PRGR G VR + L +R D G +E + A +H + R G+ ++R
Sbjct: 105 SKDAPLPRGRRGTVRSSKL--IRPDDGEEEGKEDENRGENAPVH--GEGRRGAS-RRARA 159
Query: 216 VPAVNTTTRHAAPPRGRPTDG 278
P V TTR A P + G
Sbjct: 160 EPVVAPTTRRRAAPTSKIETG 180
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 33.1 bits (72), Expect = 0.28
Identities = 33/95 (34%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Frame = +2
Query: 17 SGRGPNLLR-GPRA*GARGVCETQRSAGVESR--PRAQGI*GPPTKRLPC-----TLTPG 172
S PN L PR+ + RS SR P P++R P TLTP
Sbjct: 96 SSASPNRLSLSPRSSSSNTALTRTRSTNSSSRCSPPLSLQSSTPSRRSPTPPGNKTLTPP 155
Query: 173 VRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRR 277
RSPS R S G N TRGA+P +RR
Sbjct: 156 RRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>06_03_0732 +
23965090-23965431,23965610-23965746,23967359-23967417,
23968817-23970135
Length = 618
Score = 32.3 bits (70), Expect = 0.49
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 205 RVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGY 375
RV + P RRH + P+ + P S+S+ TA+LP PG A G Y
Sbjct: 231 RVSTTTTGRVNPKRRRHRQQQPPS-----APAPAASLSSSTASLPASPGRALGTGNY 282
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA 357
VGG ++ RR P TG G +RRPT++ A L P A
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTSTPCPTEARLSSWPAAA 208
>03_03_0023 + 13839421-13840326
Length = 301
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/49 (44%), Positives = 24/49 (48%)
Frame = +1
Query: 250 RHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPA 396
R P PT RR SRR + V AL RP A VPG+P P PA
Sbjct: 10 RLPRPTAPTARR--SRR----LRVVAVALRTRPTSLA-VPGFPPAPAPA 51
>04_04_1602 + 34712748-34713097,34715452-34715605,34715702-34716103
Length = 301
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 168 PASDLRPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGS 281
PAS + G+K G G PA T+ A + +P +GS
Sbjct: 251 PASAAKDGAKDGAKDGTPAPANGTKKPAESKEKPANGS 288
>09_04_0434 - 17533633-17534637
Length = 334
Score = 29.1 bits (62), Expect = 4.6
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 247 RRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEP 393
R H P R RRP +SA A +P + G P Y P+P
Sbjct: 267 RGHQHKPEPQEPR-QLRRPPPHLSAAAAVSAAQPVEPCGAPMYACHPQP 314
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +1
Query: 280 RRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPACRVGTR 414
RR S PT+S S++T+ RP A G P PA A V TR
Sbjct: 435 RRTRSTPPTSSASSMTSPRWCRPHAAGGAP-IPAASSDAKTVATR 478
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +1
Query: 259 EDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAA 360
ED P+G D RRP + A P RP AA
Sbjct: 537 EDVGPSGEASDERRPAGEGTTTRRARPRRPRAAA 570
>10_08_0256 +
16252773-16253005,16253309-16253396,16253525-16253548,
16253662-16253730,16253834-16254056,16254147-16254252,
16254303-16254570
Length = 336
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 316 SAVTAALPGRPGDAAGVPGYPAGPEPACR 402
+A AA PGR G A GV P G A R
Sbjct: 26 AAAAAAAPGRRGAAGGVSSIPKGAGAAAR 54
>07_03_0350 + 17077481-17078225,17078585-17078647,17078773-17078786
Length = 273
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 217 FPRSTLQPDTR-RHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPE 390
F S+LQP R + +PT D +P+ S+ + P +P +PG P P+
Sbjct: 16 FAVSSLQPSAAVRDAQVFKPTVANADVTQPSASLVGLPGLPPLQPLPTIQIPGLPPLPQ 74
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 164 TPGVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRRVVE 286
+P +RSPSG+K + + G N+ R T R PD ++++
Sbjct: 497 SPMLRSPSGLKNFNAELKAAGYDLNRWRETTRRRPDLQILD 537
>04_04_1658 - 35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 226 STLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPG 342
ST +PD R+ P D P +RG ++ +A AA G
Sbjct: 976 STARPDCRQSPSDMAPGKQRGKAKGAPPPPAAPNAAAAG 1014
>04_04_1330 - 32700333-32700770
Length = 145
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 170 GVRSPSGVKTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAI 292
G R G E GG R +H + A+P P+R VV +
Sbjct: 20 GSRRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVV 60
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 183 RPGSKPGQSRGVPAVNTTTRHAAPPRGRPTDGSS 284
R G + G+ P+ TTRHA P R DG +
Sbjct: 583 RRGGRGGRRLPSPSTRPTTRHALPGEDRSHDGGA 616
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +1
Query: 247 RRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPACRVGTRYTAD 426
R+ A T +G R P T+ + P R A PG PA + + R T D
Sbjct: 95 RQGAPPAAATSVQGAPRAPATAATVPQGGSPRRTVPAQSAPGGPATAQSSPRAATTTKLD 154
Query: 427 R 429
+
Sbjct: 155 K 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,568
Number of Sequences: 37544
Number of extensions: 395240
Number of successful extensions: 1646
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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