Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_I05
(837 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 33 0.33
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 33 0.33
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 33 0.33
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 33 0.33
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 33 0.33
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 33 0.33
Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical pr... 32 0.44
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 32 0.44
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 32 0.44
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 32 0.58
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical pr... 31 0.77
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 31 1.0
AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen prot... 31 1.0
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 31 1.3
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 31 1.3
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 31 1.3
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 31 1.3
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 30 1.8
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 30 1.8
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 30 1.8
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 30 1.8
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 30 2.3
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 30 2.3
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 30 2.3
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 3.1
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 5.4
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 29 5.4
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 5.4
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 7.2
AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen prot... 28 7.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 9.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 9.5
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 28 9.5
>Z49938-2|CAA90187.1| 306|Caenorhabditis elegans Hypothetical
protein F38A3.1 protein.
Length = 306
Score = 32.7 bits (71), Expect = 0.33
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAA--GVPGYPA 381
V G P QP ++ P + P GR G + A PG PGDA G PG P
Sbjct: 227 VPGAPGPAGQPGSQGEPGPSGPDGRPGQPGQ---------AGQPGGPGDAGNDGQPGQPG 277
Query: 382 GP 387
GP
Sbjct: 278 GP 279
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRP---TTSVSAV-TAALPGRPGDAA--GVP 369
+GG P Q +P P G G P T + A LPGRPG+ G
Sbjct: 327 LGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTD 386
Query: 370 GYPAGPEPACRVG 408
GYP P PA +G
Sbjct: 387 GYPGAPGPAGPIG 399
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 199 PVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA--AGVPG 372
P + G P + P T +P P G G++ P LPG GD G+PG
Sbjct: 370 PPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPG 429
Query: 373 YPAGPEPA 396
P P+
Sbjct: 430 APGVSGPS 437
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRP---TTSVSAV-TAALPGRPGDAA--GVP 369
+GG P Q +P P G G P T + A LPGRPG+ G
Sbjct: 326 LGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTD 385
Query: 370 GYPAGPEPACRVG 408
GYP P PA +G
Sbjct: 386 GYPGAPGPAGPIG 398
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 199 PVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA--AGVPG 372
P + G P + P T +P P G G++ P LPG GD G+PG
Sbjct: 369 PPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPG 428
Query: 373 YPAGPEPA 396
P P+
Sbjct: 429 APGVSGPS 436
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRP---TTSVSAV-TAALPGRPGDAA--GVP 369
+GG P Q +P P G G P T + A LPGRPG+ G
Sbjct: 326 LGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTD 385
Query: 370 GYPAGPEPACRVG 408
GYP P PA +G
Sbjct: 386 GYPGAPGPAGPIG 398
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 199 PVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA--AGVPG 372
P + G P + P T +P P G G++ P LPG GD G+PG
Sbjct: 369 PPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPG 428
Query: 373 YPAGPEPA 396
P P+
Sbjct: 429 APGVSGPS 436
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRP---TTSVSAV-TAALPGRPGDAA--GVP 369
+GG P Q +P P G G P T + A LPGRPG+ G
Sbjct: 327 LGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTD 386
Query: 370 GYPAGPEPACRVG 408
GYP P PA +G
Sbjct: 387 GYPGAPGPAGPIG 399
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 199 PVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA--AGVPG 372
P + G P + P T +P P G G++ P LPG GD G+PG
Sbjct: 370 PPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPG 429
Query: 373 YPAGPEPA 396
P P+
Sbjct: 430 APGVSGPS 437
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 32.7 bits (71), Expect = 0.33
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Frame = +1
Query: 196 NPVRVG--GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGR---PGDA- 357
NP G G P T++ P A P G G + P T+ + + PG+ PGDA
Sbjct: 219 NPGNAGTPGIPGKTIEV-----PAPAGPAGAPGPAGPPGTAGTPGSQGQPGKDGSPGDAG 273
Query: 358 ----AGVPGYPAGPEPACRVGTR 414
AG PG+P G P G R
Sbjct: 274 DNGTAGSPGHPGGEGPVGPDGAR 296
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 32.7 bits (71), Expect = 0.33
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Frame = +1
Query: 208 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRP---TTSVSAV-TAALPGRPGDAA--GVP 369
+GG P Q +P P G G P T + A LPGRPG+ G
Sbjct: 363 LGGIPGLPGQKGEAGYPGRDGPKGNSGPPGPPGGGTFNDGAPGPPGLPGRPGNPGPPGTD 422
Query: 370 GYPAGPEPACRVG 408
GYP P PA +G
Sbjct: 423 GYPGAPGPAGPIG 435
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Frame = +1
Query: 199 PVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA--AGVPG 372
P + G P + P T +P P G G++ P LPG GD G+PG
Sbjct: 406 PPGLPGRPGNPGPPGTDGYPGAPGPAGPIGNTGGPGLPGYPGNEGLPGPKGDKGDGGIPG 465
Query: 373 YPAGPEPA 396
P P+
Sbjct: 466 APGVSGPS 473
>Z71258-1|CAA95780.1| 307|Caenorhabditis elegans Hypothetical
protein C01H6.1 protein.
Length = 307
Score = 32.3 bits (70), Expect = 0.44
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 199 PVRVGGFP-RSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGY 375
PV + G+P R L + + + P G RG+ +P ++ LPGRPG + G PG
Sbjct: 150 PVGLPGYPGRDGLPGEPGPNGKPGNP-GYRGEDGKPGRPGEPGSSGLPGRPG-SDGKPGL 207
Query: 376 P 378
P
Sbjct: 208 P 208
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 334 LPGRPGDAAGVPGYPAGP 387
LPGRPG + G+PGYP GP
Sbjct: 633 LPGRPG-SDGLPGYPGGP 649
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 32.3 bits (70), Expect = 0.44
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 334 LPGRPGDAAGVPGYPAGP 387
LPGRPG + G+PGYP GP
Sbjct: 632 LPGRPG-SDGLPGYPGGP 648
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical
protein F57B1.4 protein.
Length = 317
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
G P + Q P P G G S +P ++ +A PG+ D G PG PAGP
Sbjct: 192 GAPGAPGQSGGASLPGPPGPAGPPGPSGQPGSNGNAGAPGAPGQVVDVPGTPG-PAGP 248
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG 384
G P T+ P P G+ G + TT ++ + R GD AG P PAG
Sbjct: 64 GKPNPPAGDPTKLKPGGGGPAGKPGPNAGDTTKPNSQSGDPKPRGGDPAGKPNPPAG 120
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical
protein F57B1.3 protein.
Length = 313
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
P P G G S +P ++ +A PG+ D G PG PAGP
Sbjct: 202 PGPPGPAGPPGPSGQPGSNGNAGAPGAPGQVVDVPGTPG-PAGP 244
>Z49131-6|CAA88979.1| 297|Caenorhabditis elegans Hypothetical
protein ZC373.7 protein.
Length = 297
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = +1
Query: 265 ARPTGRRGDSRRPTTSVSAVTAALPGRPGDAA--GVPGYPAGPEPACRVG 408
A P G +G RP SA PG+PG G PG GP R G
Sbjct: 160 AGPAGPKGPDGRPGQPGSAGHPGAPGQPGSKGNNGAPGAAGGPGQPGRPG 209
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGD----AAGVPGYPAGPEPACR 402
QP + HP G +G++ P + PG+ G +AG PG P PA
Sbjct: 174 QPGSAGHPGAPGQPGSKGNNGAPGAAGGPGQPGRPGKDGQRGKGSAGAPGAPGKAGPAGP 233
Query: 403 VG 408
G
Sbjct: 234 AG 235
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
P P G G S +P ++ +A PG D G PG PAGP
Sbjct: 203 PGPPGPAGPPGPSGQPGSNGNAGAPGAPGHVVDVPGTPG-PAGP 245
>AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen protein
55 protein.
Length = 208
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
P RP G G +P S + + PG+PG AG G P P
Sbjct: 128 PGAPRPQGPAGGPGQPVQSGGSGASGAPGQPGQ-AGAQGTPGAP 170
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
G P + Q P P G G + +P ++ +A PG+ D G PG PAGP
Sbjct: 191 GAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG-PAGP 247
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG 384
P + G++G S P + AALPG PG AG PG PAG
Sbjct: 178 PGPSGAPGQKGPSGAPGAPGQSGGAALPGPPG-PAGPPG-PAG 218
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
G P + Q P P G G + +P ++ +A PG+ D G PG PAGP
Sbjct: 191 GAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG-PAGP 247
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG 384
P + G++G S P + AALPG PG AG PG PAG
Sbjct: 178 PGPSGAPGQKGPSGAPGAPGQSGGAALPGPPG-PAGPPG-PAG 218
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 190 GQNPVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAA--G 363
G++ R G P S QP +R PE P G+ G+ RP A A PG G+ G
Sbjct: 200 GRDGTRGVGQPGSPGQPGSRG-PEG--PRGQPGNMGRPGEYGDAGPAGQPGNDGEQGPDG 256
Query: 364 VPGYPAGP 387
V G P P
Sbjct: 257 VVGIPGEP 264
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
G P + Q P P G G + +P ++ +A PG+ D G PG PAGP
Sbjct: 191 GAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG-PAGP 247
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG 384
P + G++G S P + AALPG PG AG PG PAG
Sbjct: 178 PGPSGAPGQKGPSGAPGAPGQSGGAALPGPPG-PAGPPG-PAG 218
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
G P + Q P P G G + +P ++ +A PG+ D G PG PAGP
Sbjct: 191 GAPGAPGQSGGAALPGPPGPAGPPGPAGQPGSNGNAGAPGAPGQVVDVPGTPG-PAGP 247
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG 384
P + G++G S P + AALPG PG AG PG PAG
Sbjct: 178 PGPSGAPGQKGPSGAPGAPGQSGGAALPGPPG-PAGPPG-PAG 218
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 253 HPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
HP A GR G + ++ A A P P +G PG P GP
Sbjct: 204 HPGQAGSPGRPGVDAQSQSNPGAPGQAGPQGPPGPSGAPGAPGGP 248
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPACR 402
P A P+G G RP + LPG PG P +P P P CR
Sbjct: 112 PGPAGPSGAPGKPGRPGRPGAG---GLPGNPGRPPAQPCHPITP-PPCR 156
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 262 DARP--TGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYP 378
D RP GRRG+ RP A PGR G+ G PG+P
Sbjct: 170 DGRPGQPGRRGNDGRPGQPGPQGNAGQPGRDGN-PGQPGHP 209
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAA--GVPGYPAGPE 390
+P + P P G GDS P + A PG PG G PG P PE
Sbjct: 146 KPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPGPKGPKGPPGAPGAPE 199
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 214 GFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
G P + Q P P G G S +P ++ + PG+ D G PG PAGP
Sbjct: 226 GAPGAPGQSGGSALPGPPGPAGSPGRSGQPGSNGNVGAPGAPGQVVDVPGAPG-PAGP 282
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPACRVG 408
P + G++G S P + +ALPG PG AG PG P VG
Sbjct: 213 PGPSGAPGQKGPSGAPGAPGQSGGSALPGPPG-PAGSPGRSGQPGSNGNVG 262
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDA--AGVPGYPAGPEPACRVG 408
P A GR G+ +P PG PG A AG PG P P R G
Sbjct: 193 PGPAGQAGRPGNDGQPGAPSFGGGVGAPGAPGPAGDAGSPGQPGAPGQPGRPG 245
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1010.7 protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 337 PGRPGDAAGVPGYPAGPEPAC 399
PGRPG A G PG+P P C
Sbjct: 117 PGRPG-APGAPGFPGRPPAVC 136
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 262 DARP--TGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPACRVGTRY--TADR 429
D RP GR+G++ RP A PGR G+ PG P P R G + TA R
Sbjct: 169 DGRPGQPGRKGNNGRPGQPAPQGNAGHPGRDGE----PGQPGNPGKDGRKGRGHPGTAGR 224
Query: 430 VALP 441
P
Sbjct: 225 PGQP 228
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +1
Query: 265 ARPTGRRGDSRRPTTSVSAVTAALPGRPGDA-----AGVPGYPAGPEPACRVGTR 414
A P G RGD+ P + G PG+A G PG GP P R G R
Sbjct: 147 AGPRGPRGDAGPPGPPGNGGRPGQRGTPGEAGTPGPVGEPGETGGPGPQGRPGQR 201
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 253 HPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
HP A G+ G + ++ A A P P ++G PG P GP
Sbjct: 183 HPGQAGAPGQPGVDAQSQSTPGAPGQAGPQGPPGSSGAPGAPGGP 227
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.1
Identities = 20/53 (37%), Positives = 22/53 (41%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGPEPACRVGTR 414
P A P G+ G P T S PG PG A G PG P PA G +
Sbjct: 232 PGQAGPDGQPGAPGGPGTPGSKGPPGNPGAPG-ADGKPGAPGQAGPAGAKGEK 283
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
+P + P P G GDS P + A PG PG G PG P P
Sbjct: 146 KPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG-PKGPPGPPGAP 195
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 217 FPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVP 369
F R + + +D G++G S + + SVS +A+ P R AA P
Sbjct: 55 FTREAARKAEIKAKKDKMAAGKKGASSKASASVSKASASTPARGAKAAPKP 105
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAGP 387
+P + P P G GDS P + A PG PG G PG P P
Sbjct: 146 KPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEPG-PKGPPGPPGAP 195
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/80 (26%), Positives = 28/80 (35%)
Frame = +1
Query: 175 PISVRGQNPVRVGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGD 354
P G+N P + +P P P G G P + PG+PG
Sbjct: 192 PAGPPGENGNNGEPQPGAPGEPGQPGQPGQRGPAGEPGKDGSPGGQGEKGASGEPGQPG- 250
Query: 355 AAGVPGYPAGPEPACRVGTR 414
G PG+P P R G +
Sbjct: 251 RDGQPGHPGQPGKDGRPGEK 270
>AF022985-9|AAB69960.1| 314|Caenorhabditis elegans Collagen protein
141 protein.
Length = 314
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 256 PEDARPTGRRGDSRRPTTSVSAVTAALPGRPGD-AAGVPGYPAGPEP 393
P A PTG GD+ P + PGR G + G+PG P P
Sbjct: 173 PGPAGPTGPTGDAGAPGQPGHPGSPGNPGRGGQRSRGLPGPSGRPGP 219
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG----PEPACR 402
+P + P P G GD T T A PG PG G PG PAG P PA
Sbjct: 148 KPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG-PRGPPG-PAGEAGAPGPAGE 205
Query: 403 VGT 411
GT
Sbjct: 206 PGT 208
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG----PEPACR 402
+P + P P G GD T T A PG PG G PG PAG P PA
Sbjct: 143 KPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG-PRGPPG-PAGEAGAPGPAGE 200
Query: 403 VGT 411
GT
Sbjct: 201 PGT 203
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 9.5
Identities = 24/63 (38%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 235 QPDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPGDAAGVPGYPAG----PEPACR 402
+P + P P G GD T T A PG PG G PG PAG P PA
Sbjct: 143 KPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSPG-PRGPPG-PAGEAGAPGPAGE 200
Query: 403 VGT 411
GT
Sbjct: 201 PGT 203
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Frame = +1
Query: 238 PDTRRHPEDARPTGRRGDSRRPTTSVSAVTAALPGRPG-----DAAGVPGYPAGP 387
P +P DA TG GD P + PG PG AG PG P P
Sbjct: 207 PGEPGNPGDAGATGAPGDDGAPGRDGQPGQSGPPGPPGPPGNVGEAGPPGKPGQP 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,441
Number of Sequences: 27780
Number of extensions: 281049
Number of successful extensions: 1033
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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