Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_I03
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   0.57 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   5.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.1  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   9.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.4  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -3

Query: 393 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 214
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 213 THRHSL 196
             + +L
Sbjct: 81  VRKEAL 86


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 618 RHDVCKRSV--RSRSPHPLEIPSGYSITILQDSRRSAL 511
           R DV K+SV   S S  PL++  GYS+  L+D  R AL
Sbjct: 61  RLDVAKKSVYAESESKLPLKMKKGYSVH-LKDQSRDAL 97


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 653 NKVTLYKTCIRPVMTYASVVFAHAARTHLKSLQVI 549
           N +T+ ++ +RPV TY S        +HL  + V+
Sbjct: 220 NDITIKESDVRPVSTYHSFALTSDNNSHLYGICVV 254


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 209 WVSSLVEPFVASDGFDEDGDRCLWCLK 289
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 393 RSRWKLHTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTS 220
           ++R  LH +  R  GKP       +YG    I   +   +   P  ++P+ +   +TS
Sbjct: 66  KTRKHLHVKVRRDRGKPLIEEPEENYGIKDRIPVYYEEEELPEPHVTSPTKSEFATTS 123


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 329 KHVITDPPDPLTVLLGTTSTGH 264
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,647
Number of Sequences: 5004
Number of extensions: 55801
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)