Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_H23
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0515 - 3864796-3865425 31 1.6
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 30 2.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 25 2.4
08_02_0796 - 21300251-21300373,21300846-21301721 24 5.8
12_01_0302 - 2286171-2286341,2286747-2286968 29 6.4
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 6.4
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 6.4
07_01_0080 + 587674-588510 28 8.4
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 25 9.1
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 25 9.4
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/43 (34%), Positives = 16/43 (37%)
Frame = +3
Query: 693 SPXPPGXGWFXXXPGXPPXSSXXXX*GVAPXPPXPVXXRPSPP 821
SP PP G P PP + P PP P P PP
Sbjct: 60 SPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPP 102
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 30.3 bits (65), Expect = 2.1
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -3
Query: 621 INPPDAVXERSSAPGVKASVVIRGLHQRISPPSSLGMXKGVSPPYFQVNDESQASRLIS 445
++PP R P K S V G H +SPP + SPP +S+ S+ IS
Sbjct: 170 LSPPRQRRRRQDTPSPKGSEVAGG-HDDLSPPRKSRQQRDPSPPRRLSRHDSKESQDIS 227
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 25.0 bits (52), Expect(2) = 2.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 742 PPXLXXXXXKAXPPPPPXP 798
PP L + PPPPP P
Sbjct: 591 PPPLPNCLVPSPPPPPPPP 609
Score = 23.8 bits (49), Expect(2) = 8.7
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 778 PPPPPXPXXXAXLPP 822
PPPPP P PP
Sbjct: 589 PPPPPLPNCLVPSPP 603
Score = 23.8 bits (49), Expect(2) = 6.7
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +1
Query: 742 PPXLXXXXXKAXPPPPPXP 798
PP L PPPPP P
Sbjct: 624 PPPLPNHSVLPPPPPPPPP 642
Score = 23.4 bits (48), Expect(2) = 2.4
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 778 PPPPPXPXXXAXLPP 822
PPPPP P PP
Sbjct: 622 PPPPPLPNHSVLPPP 636
Score = 23.0 bits (47), Expect(2) = 6.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 772 AXPPPPPXPXXXAXLP 819
A PPPPP P + P
Sbjct: 664 APPPPPPPPRSSSRTP 679
Score = 22.6 bits (46), Expect(2) = 8.7
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = +1
Query: 742 PPXLXXXXXKAXPPPPPXP 798
PP + PPPPP P
Sbjct: 573 PPLPQSNYASSQPPPPPPP 591
>08_02_0796 - 21300251-21300373,21300846-21301721
Length = 332
Score = 24.2 bits (50), Expect(2) = 5.8
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +1
Query: 742 PPXLXXXXXKAXPPPPPXP 798
PP L PPPPP P
Sbjct: 97 PPLLALPPPPPPPPPPPPP 115
Score = 23.0 bits (47), Expect(2) = 5.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = +1
Query: 778 PPPPPXPXXXAXLP 819
PPPPP P LP
Sbjct: 110 PPPPPPPQPQQHLP 123
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 80 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREE 178
RL+R RK + D+ G + +GEKLE + +E
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKE 89
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 72 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 218
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 6.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 239 PPFDTVLYDNIRTVLKDNKTTLLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>07_01_0080 + 587674-588510
Length = 278
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +3
Query: 696 PXPPGXGWFXXXPGXPPXSSXXXX*GVAPXPPXPVXXRPSPPL 824
P G G F P PP P PP P P PPL
Sbjct: 80 PRLGGDGMFRRPPPPPPPPPSSGSPPPPPPPPPPPPPPPPPPL 122
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 25.0 bits (52), Expect(2) = 9.1
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 778 PPPPPXPXXXAXLPP 822
PPPPP P +PP
Sbjct: 79 PPPPPPPPPPVPVPP 93
Score = 21.4 bits (43), Expect(2) = 9.1
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +1
Query: 742 PPXLXXXXXKAXPPPPPXP 798
PP PPPPP P
Sbjct: 66 PPAGIAVHPSPPPPPPPPP 84
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 24.6 bits (51), Expect(2) = 9.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 778 PPPPPXPXXXAXLPP 822
PPPPP P +PP
Sbjct: 43 PPPPPPPKPPPTVPP 57
Score = 21.8 bits (44), Expect(2) = 9.4
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +1
Query: 742 PPXLXXXXXKAXPPPPPXP 798
PP PPPPP P
Sbjct: 33 PPDPYGADLSPPPPPPPKP 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,418,249
Number of Sequences: 37544
Number of extensions: 544172
Number of successful extensions: 3654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3092
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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