Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_H18
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1004 + 23244479-23244648,23245104-23245276,23245535-232456... 31 1.5
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 30 2.7
03_02_1036 + 13573160-13573243,13573361-13573684,13573880-135741... 30 2.7
01_03_0241 - 14111286-14111935,14111992-14112115 30 2.7
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 29 3.6
03_06_0713 - 35687672-35689219 29 3.6
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 29 3.6
12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702 29 4.7
04_03_0672 + 18559984-18559986,18560096-18560569,18560666-185608... 29 4.7
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 29 4.7
12_01_0633 - 5241098-5241283,5241361-5241453,5241555-5241615,524... 29 6.2
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 6.2
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011... 29 6.2
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 28 8.2
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 28 8.2
>07_03_1004 +
23244479-23244648,23245104-23245276,23245535-23245638,
23245849-23246037,23246508-23248076
Length = 734
Score = 30.7 bits (66), Expect = 1.5
Identities = 29/89 (32%), Positives = 36/89 (40%)
Frame = +1
Query: 214 KPHRAPPHRLHETYGTAMRAESLALGGTRTDVKTGFHPRENPVEPRLGRHTVSGAQEPPC 393
K +A PH L + G AMR +G TR++V H R E LG H C
Sbjct: 69 KSRQAKPHLLKD--GQAMR-----VGITRSEVIAIRHSRTGRAES-LGAHWFLARASGVC 120
Query: 394 TASPPDQQSECPGRPRXRXSIVPTRAERG 480
P + CP R R S+ R RG
Sbjct: 121 LVFPWPARRRCPSR---RRSLFRLRCRRG 146
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 118 KDRGPSPPPISHRRLHLEKGARSTCPAER-LPT-KPHRAPP 234
K+ P PPP +++RL+ + G+ A+ P+ KP R PP
Sbjct: 45 KEEAPPPPPANNKRLNPQGGSNRKKKADAGTPSKKPKRQPP 85
>03_02_1036 +
13573160-13573243,13573361-13573684,13573880-13574143,
13574662-13574793,13574919-13575620
Length = 501
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 382 PVRRSRCVSRDEVLRDFPGDEIPS*HQYGYRLRRDFRRASR 260
PV RSR SR + L GD+ + Q GY RR F RA R
Sbjct: 333 PVLRSR--SRADRLACVGGDDDDADRQLGYSARRSFTRAGR 371
>01_03_0241 - 14111286-14111935,14111992-14112115
Length = 257
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 476 RSALVGTIEXRXRGRPGHSDCWSGGE--AVQG 387
R LVG + R R R G +D W GGE AV+G
Sbjct: 221 RGELVGGADSRGRRRGGAADGWGGGEEAAVRG 252
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +1
Query: 121 DRGPSPPPI-SHRRLHLEKGARSTCPAERLPT 213
DRG SPPP+ H R G + C LPT
Sbjct: 278 DRGDSPPPLPDHLRCRRSDGKKWRCQNRALPT 309
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 136 PPPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAM 267
P +SH +++ RST PA R R PP R H G A+
Sbjct: 4 PATVSHTTCAIQRRRRSTAPARR------RGPPSRRHPHSGAAL 41
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 325 PRENPVEPRLGRHTVSGAQEPPCTASPPDQ 414
PRE PV PR GRH G P D+
Sbjct: 3 PREVPVRPRAGRHRAHGEAPADDRGGPGDE 32
>12_02_0147 + 14403046-14403285,14403371-14404078,14404145-14404702
Length = 501
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 75 CRTPAPPERKKGR-REGPRSFTSPNFSQETTP*KRRAK 185
C++P+P RKKG EG + + P ET P RR+K
Sbjct: 54 CQSPSPKRRKKGNGEEGDKDYIPP-IEGETAP--RRSK 88
>04_03_0672 +
18559984-18559986,18560096-18560569,18560666-18560836,
18561494-18561640
Length = 264
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/111 (24%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Frame = +1
Query: 124 RGPSPPPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAESLALGGTRT 303
R P PP S A+ P + A PHR H + R +G
Sbjct: 43 RHPEPPSKSPLHPAYTPDAQGQSPMNPQHGRRQEADPHRRHSL--SQQREVGGGIGSAPR 100
Query: 304 DVKTGFHPRENPVEPR---LGRHTVSGAQEPPCTASPPDQQSECPGRPRXR 447
H +P +P +H SG Q P AS P R R +
Sbjct: 101 SPYRMVHGSASPAQPNNPSKPKHRSSGMQTPERRASSEGHGQHTPRRSRDK 151
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/57 (24%), Positives = 21/57 (36%)
Frame = +1
Query: 322 HPRENPVEPRLGRHTVSGAQEPPCTASPPDQQSECPGRPRXRXSIVPTRAERGLSHA 492
HP +P P + A +PP A D ++ P P + P + S A
Sbjct: 152 HPPHSPSTPEKTQAATPSATQPPSPAVTEDGRTNSPATPNRIIPVTPRPGKHSTSSA 208
>12_01_0633 -
5241098-5241283,5241361-5241453,5241555-5241615,
5241703-5241813,5241960-5242145,5242229-5242590,
5242730-5243152,5243159-5244382,5244468-5244707
Length = 961
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 75 CRTPAPPERKKG-RREGPRSFTSPNFSQETTP*KRRAK 185
C++P+P +RKKG EG + + P ET P RR+K
Sbjct: 54 CQSPSPKKRKKGDGEEGDKDYIPPK-EGETAP--RRSK 88
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 130 PSPPPISHRRLH-LEKGARSTCPAERLPTKPHRAP 231
P PPP++ H L+ A + A+RLP RAP
Sbjct: 233 PPPPPLAPTTRHRLDTAAATATVAQRLPPSEARAP 267
>01_06_0430 +
29299970-29300031,29300162-29300294,29301057-29301160,
29302201-29302372,29302488-29302628,29302707-29303055,
29303133-29305477
Length = 1101
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 129 SFTSPNFSQETTP*KRRAKHL 191
+F SP ++ ETTP K++A+HL
Sbjct: 389 AFESPAYTHETTPRKQQAEHL 409
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/56 (35%), Positives = 22/56 (39%)
Frame = -2
Query: 404 GEAVQGGSCAPLTVCLPRRGSTGFSRG*NPVLTSVRVPPKARLSARIAVP*VSCSR 237
GE V GS APL V G G +PV R P +A L P SR
Sbjct: 425 GEFVSAGSKAPLEVVSVEDGEEVNQAGGSPVYAQSRSPIRAPLGVSFGDPKAQNSR 480
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 266 CAPKVSP*AVPVLMLRRDFIPGKIP*NLVSGDTP*AAHRSHLAPLHHRTNSPSARGA 436
C P P P+L RR + P L + + SHL P R+ SPS RG+
Sbjct: 16 CRPLPLP---PLLHRRRRVVLNPSPRTLTTRAEALFSRHSHLLPADDRSPSPSTRGS 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,142,510
Number of Sequences: 37544
Number of extensions: 459212
Number of successful extensions: 1652
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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