Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H18
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical ...    33   0.26 
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    33   0.34 
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    33   0.34 
AL117207-22|CAO82073.1|  505|Caenorhabditis elegans Hypothetical...    30   1.8  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    29   3.2  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    29   4.2  

>AC006629-1|AAK18925.1|  330|Caenorhabditis elegans Hypothetical
           protein F12E12.5 protein.
          Length = 330

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = +1

Query: 112 EEKDRGPSPPPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAESLALG 291
           +E  R  +P P S  RL     + S  P  +L   P   PP +L    GT+   E     
Sbjct: 177 KEALRSSAPAPTSSARLSPITVSTSGSPRAQLAISPQEKPPQKLSINLGTSPMIEEFCEQ 236

Query: 292 GTRTDVKTG--FHPRENPVEPRLGRHTVSGAQEP 387
            + T   T     P  +P EPR  R+ ++    P
Sbjct: 237 NSATLPNTDQQLSPTLSPNEPRF-RNLITSEPTP 269


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 262  AMRAESLALGGTRTDVKTGFHPRENPVEPRLGRHTVSGAQEPPCTASPPDQQS 420
            A  A   A G +R+  K    P+E P+E      TV+GA   P T +  +Q +
Sbjct: 1413 AKAANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVNGATSEPATDAESEQNA 1465


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 262  AMRAESLALGGTRTDVKTGFHPRENPVEPRLGRHTVSGAQEPPCTASPPDQQS 420
            A  A   A G +R+  K    P+E P+E      TV+GA   P T +  +Q +
Sbjct: 1413 AKAANGSAQGSSRSTPKPKEEPKEEPMEKEDATETVNGATSEPATDAESEQNA 1465


>AL117207-22|CAO82073.1|  505|Caenorhabditis elegans Hypothetical
           protein Y60A3A.27 protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 148 KLGEVKDLGPSLLPFFLSGGAGVRHN 71
           +LG  KD G  LLPFFL G A  R++
Sbjct: 56  RLGIPKDTGTRLLPFFLDGVAKTRYD 81



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 148 KLGEVKDLGPSLLPFFLSGGAGVRHN 71
           +LG  KD G  LLPFFL G A  R++
Sbjct: 444 RLGIPKDTGTRLLPFFLDGVAKTRYD 469


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
            protein Y75B8A.13 protein.
          Length = 1420

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +1

Query: 304  DVKTGFHPRENPVEPRLGRHTVSGAQEPPCTASPPDQQSECPGRPRXRXSIVPTRAERGL 483
            DV +G H  E+P   R       G +E   ++   D  SE PG PR +    P  A    
Sbjct: 864  DVSSGSH--EDPTAARERLDDPQGLRESSPSSDESDSSSEAPGSPRQQDP-EPIEAFTEA 920

Query: 484  SHAP 495
            S AP
Sbjct: 921  SEAP 924


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 27/112 (24%), Positives = 44/112 (39%)
 Frame = +1

Query: 118 KDRGPSPPPISHRRLHLEKGARSTCPAERLPTKPHRAPPHRLHETYGTAMRAESLALGGT 297
           K R  SPP  + RR      ++S  PA +      ++PP R   +   +      A    
Sbjct: 335 KSRSKSPPAPA-RRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPP--APRRR 391

Query: 298 RTDVKTGFHPRENPVEPRLGRHTVSGAQEPPCTASPPDQQSECPGRPRXRXS 453
           R+  K+     +  + P   R + S ++ PP        +S+ P  PR R S
Sbjct: 392 RSPSKSRSPAPKREIPPARRRRSPSASKSPP-APKRAKSRSKSPPAPRRRRS 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,985
Number of Sequences: 27780
Number of extensions: 321967
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)