Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H18
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.072
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    23   2.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.072
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
 Frame = +1

Query: 244 HETYGTAMRAESLALGGTRTDVKTGFHPRENPVEP--RLGRHTVS--GAQEPPCTASPPD 411
           HET+G+    E L +  T +D      PR++P+EP   + +++VS    +E   T  P D
Sbjct: 266 HETFGSKKTME-LHIK-THSDSSVVGSPRDSPIEPEIEISQNSVSTGSDKENHKTEEPND 323

Query: 412 QQSECPGRPRXRXSIVPTRAERGLSH 489
           + +     PR     + +R +   SH
Sbjct: 324 EVATYDNTPRDFPYYMYSREQYSQSH 349


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 363 VSPETRFYGIFPGMKSRLN 307
           ++PE  F+G+ PG  S  N
Sbjct: 60  INPEYGFFGVAPGTSSATN 78


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 91  GAGVRHNPVRYPPS 50
           G G  H+P ++PPS
Sbjct: 397 GTGREHDPAKFPPS 410


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 289 GGTRTDVKTGFHPRENPVEPRLGR 360
           G T TDV+ G   R NP++  + +
Sbjct: 136 GDTVTDVEAGLASRTNPLDDSISQ 159


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 289 GGTRTDVKTGFHPRENPVEPRLGR 360
           G T TDV+ G   R NP++  + +
Sbjct: 131 GDTVTDVEAGLASRTNPLDDSISQ 154


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 377 HRSHLAPLHHRTNSPSARGA 436
           H SH A  HH+ ++P A  +
Sbjct: 433 HHSHAATPHHQHSTPLAHSS 452


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 56  GVTDRVMSDSGASXXXXXXKRRTEVLHLPQFLTGD 160
           G+ DR   D+ A       + R  V  L QFLTG+
Sbjct: 629 GLRDRKYPDARAMGYPFDRQPRAGVETLAQFLTGN 663


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 615 SXVLLPXGVTXXPSXXRCXPPXPXXXXXXGXPP 713
           S V  P G    PS     PP P      G PP
Sbjct: 399 SAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPP 431


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 138 SPNFSQETTP*KRR 179
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,259
Number of Sequences: 438
Number of extensions: 4040
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)