Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_H15
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 171 6e-43
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 168 4e-42
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.3
06_03_0543 + 21967787-21970261 29 5.7
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.6
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 10.0
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 10.0
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 171 bits (416), Expect = 6e-43
Identities = 76/131 (58%), Positives = 98/131 (74%)
Frame = -3
Query: 710 FPAHTGXTXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCN 531
F +TG IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCD 153
Query: 530 TDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEE 351
TDSP+R+VDI IP N K +SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE
Sbjct: 154 TDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEE 213
Query: 350 SEKDEQQAKEQ 318
+++ E++A Q
Sbjct: 214 AKEQEEEAPAQ 224
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 783 VXXENPXXCVVISXRPFGQRXVXKFSRAHRXYAYCGTFHT 664
V ENP +V S RP+GQR V KF++ +A G HT
Sbjct: 70 VAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HT 108
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 168 bits (409), Expect = 4e-42
Identities = 74/127 (58%), Positives = 95/127 (74%)
Frame = -3
Query: 710 FPAHTGXTXIAXRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCN 531
F +TG IA R TPG FTNQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCD 153
Query: 530 TDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEE 351
TDSP+R+VDI IP N K SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE
Sbjct: 154 TDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEE 213
Query: 350 SEKDEQQ 330
+++ E++
Sbjct: 214 AKEQEEE 220
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 783 VXXENPXXCVVISXRPFGQRXVXKFSRAHRXYAYCGTFHT 664
V ENP +V S RP+GQR V KF++ +A G HT
Sbjct: 70 VAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGR-HT 108
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 210 TRCSSCFWSTPCSRRMVCPGTR 145
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 461 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 372
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 210 TRCSSCFWSTPCSRRMVCPGTR*VEHN 130
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 701 HTGXTXIAXRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 528
HT T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 527 DSPLR 513
+ P++
Sbjct: 330 EQPMQ 334
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 10.0
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 360 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 476
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,441,889
Number of Sequences: 37544
Number of extensions: 393142
Number of successful extensions: 1085
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -