Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H14
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   175   3e-44
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   173   2e-43
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.2  
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997...    29   5.7  
06_03_0543 + 21967787-21970261                                         29   5.7  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.5  
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281     28   9.9  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  175 bits (427), Expect = 3e-44
 Identities = 82/158 (51%), Positives = 108/158 (68%)
 Frame = -3

Query: 789 RAFXAIENPXXVXVISSRPFGQRAVLKLPRTPVLRLLRDVSHQVLLLNQIQAAFREPRLL 610
           R   AIENP  + V S+RP+GQRAVLK  +      +          NQ+Q +F EPRLL
Sbjct: 67  RVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLL 126

Query: 609 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 430
           I+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR V
Sbjct: 127 ILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMV 186

Query: 429 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 316
           L++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 187 LQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  173 bits (420), Expect = 2e-43
 Identities = 80/154 (51%), Positives = 105/154 (68%)
 Frame = -3

Query: 789 RAFXAIENPXXVXVISSRPFGQRAVLKLPRTPVLRLLRDVSHQVLLLNQIQAAFREPRLL 610
           R   AIENP  + V S+RP+GQRAVLK  +      +          NQ+Q +F EPRLL
Sbjct: 67  RVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLL 126

Query: 609 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREV 430
           I+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR V
Sbjct: 127 ILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMV 186

Query: 429 LRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
           L++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 187 LQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 208 TRCSSCFWSTPCSRRMVCPGTR 143
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>07_03_1226 -
           24998276-24998375,24998728-24998849,24998936-24999702,
           25000447-25000618
          Length = 386

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 627 GMQLGSGLVKAPGVKRPAISVAPV-CAATSVQHADRXAVMK*XTXXRG 767
           G  LG+G ++A GV+  + SVAPV  AAT +  A   A +      RG
Sbjct: 137 GTLLGAGAIEALGVEAHSASVAPVEPAATDLAAAGAGAALPPQRRRRG 184


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 208 TRCSSCFWSTPCSRRMVCPGTR*VEHN 128
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
          Length = 518

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 26/102 (25%), Positives = 42/102 (41%)
 Frame = +2

Query: 371 NKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITG 550
           N  + T       S+  + ST+ +N+     +   +   +  A S + S       +  G
Sbjct: 373 NSGSGTMSGIDAPSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIG 432

Query: 551 MLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWFSKSTWCETS 676
           + +   S  G WS AGSNT    G+ ++ W   S ST   TS
Sbjct: 433 VASNAGSSSGSWSNAGSNTGTLSGAGSSNW---SSSTSGSTS 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,071
Number of Sequences: 37544
Number of extensions: 404026
Number of successful extensions: 1084
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)