Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H10
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   267   1e-72
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   267   1e-72
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.80 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.4  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.3  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   7.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.4  
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.8  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  267 bits (654), Expect = 1e-72
 Identities = 131/236 (55%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           V+AHTQ++     + +  L +  + GG++ DKV+W REH EK + +   F    N+ +  
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQ--NEMIDV 217

Query: 641 CH-PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 465
               R KG +G T RW TK+LPRKTH+ LRKVACIGAWHP+ V +TVARAG  GY HRT+
Sbjct: 218 IGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQ 277

Query: 464 MNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 285
           +N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 278 LNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330

Query: 284 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 117
           P KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 331 PVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  267 bits (654), Expect = 1e-72
 Identities = 131/236 (55%), Positives = 164/236 (69%), Gaps = 1/236 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           V+AHTQ++     + +  L +  + GG++ DKV+W REH EK + +   F    N+ +  
Sbjct: 160 VLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQ--NEMIDV 217

Query: 641 CH-PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 465
               R KG +G T RW TK+LPRKTH+ LRKVACIGAWHP+ V +TVARAG  GY HRT+
Sbjct: 218 IGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQ 277

Query: 464 MNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 285
           +N KIYRIG G    D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   G
Sbjct: 278 LNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330

Query: 284 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 117
           P KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 331 PVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 408 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 506
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 375 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 497
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 205 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 92
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 138 HGYTQEGSYSRRSCGYHNPS 79
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 584 ASLCANEK*HLCILWPLGDTN-AVNHFI 664
           A+ C N   HL    P  DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 360 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 488
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 533 KLQCRQLS*XPCVSYGVASLCANEK*HLCILWPLGDTN 646
           +L  RQLS    V+ G+  LC  +   +C+  P  D++
Sbjct: 67  RLNDRQLSCVESVTNGIGLLCLKQADQVCLFTPTVDSH 104


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 420 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 545
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,453,863
Number of Sequences: 5004
Number of extensions: 73090
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)