Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H10
         (822 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   391   e-109
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   391   e-109
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   391   e-109
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   391   e-109
BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   384   e-107

>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  391 bits (962), Expect = e-109
 Identities = 187/250 (74%), Positives = 207/250 (82%), Gaps = 2/250 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           VIAH+Q++ +   + +  + +  L GG+IEDKVKW REH EKPI V  VF     D +  
Sbjct: 162 VIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFG---QDEMID 218

Query: 641 CH--PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRT 468
           C    + KG+KGVT RWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRT
Sbjct: 219 CVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 278

Query: 467 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 288
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 279 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 338

Query: 287 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 108
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 339 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 398

Query: 107 EEAAATTTPA 78
           EEAAATT  A
Sbjct: 399 EEAAATTAAA 408


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  391 bits (962), Expect = e-109
 Identities = 187/250 (74%), Positives = 207/250 (82%), Gaps = 2/250 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           VIAH+Q++ +   + +  + +  L GG+IEDKVKW REH EKPI V  VF     D +  
Sbjct: 149 VIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFG---QDEMID 205

Query: 641 CH--PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRT 468
           C    + KG+KGVT RWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRT
Sbjct: 206 CVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 265

Query: 467 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 288
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 266 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 325

Query: 287 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 108
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 326 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 385

Query: 107 EEAAATTTPA 78
           EEAAATT  A
Sbjct: 386 EEAAATTAAA 395


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  391 bits (962), Expect = e-109
 Identities = 187/250 (74%), Positives = 207/250 (82%), Gaps = 2/250 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           VIAH+Q++ +   + +  + +  L GG+IEDKVKW REH EKPI V  VF     D +  
Sbjct: 149 VIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFG---QDEMID 205

Query: 641 CH--PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRT 468
           C    + KG+KGVT RWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRT
Sbjct: 206 CVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 265

Query: 467 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 288
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 266 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 325

Query: 287 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 108
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 326 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 385

Query: 107 EEAAATTTPA 78
           EEAAATT  A
Sbjct: 386 EEAAATTAAA 395


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  391 bits (962), Expect = e-109
 Identities = 187/250 (74%), Positives = 207/250 (82%), Gaps = 2/250 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           VIAH+Q++ +   + +  + +  L GG+IEDKVKW REH EKPI V  VF     D +  
Sbjct: 162 VIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFG---QDEMID 218

Query: 641 CH--PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRT 468
           C    + KG+KGVT RWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRT
Sbjct: 219 CVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 278

Query: 467 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 288
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 279 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 338

Query: 287 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 108
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 339 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 398

Query: 107 EEAAATTTPA 78
           EEAAATT  A
Sbjct: 399 EEAAATTAAA 408


>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  384 bits (945), Expect = e-107
 Identities = 183/244 (75%), Positives = 203/244 (83%), Gaps = 2/244 (0%)
 Frame = -2

Query: 821 VIAHTQMKXLNXDKXRXTLWKSNLTGGTIEDKVKWXREHXEKPIPVDXVFAPR*ND*LHW 642
           VIAH+Q++ +   + +  + +  L GG+IEDKVKW REH EKPI V  VF     D +  
Sbjct: 173 VIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFG---QDEMID 229

Query: 641 CH--PRAKGYKGVTFRWHTKKLPRKTHKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRT 468
           C    + KG+KGVT RWHTKKLPRKTHK LRKVACIGAWHPSRVS TVARAGQKGYHHRT
Sbjct: 230 CVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRT 289

Query: 467 EMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCM 288
           E+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKGCC+
Sbjct: 290 EINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 349

Query: 287 GPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 108
           G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK AFMG LKKDR++
Sbjct: 350 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLKKDRLK 409

Query: 107 EEAA 96
           EEAA
Sbjct: 410 EEAA 413


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,329,685
Number of Sequences: 53049
Number of extensions: 843543
Number of successful extensions: 2367
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2352
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3880595628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)