Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_H09
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 31 1.2
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.7
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.8
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 6.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.4
02_05_0868 + 32342967-32343915,32344389-32344447 29 6.4
12_02_1174 - 26696869-26698191 28 8.5
11_06_0610 - 25449085-25453284 28 8.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 8.5
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/58 (29%), Positives = 20/58 (34%)
Frame = +3
Query: 681 PSXXSPPPXXXLXXXXXRXXVLPPPXXSQNXPXXXSXHYRXPXAPSPLPTXRGXXRRR 854
P+ P P R VLPPP + P H A SP+P R R
Sbjct: 11 PAPTPPAPAPAPPQVFLRRSVLPPPPAPHHAPPPPGAHVHYFRAASPIPIFRAAASSR 68
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/93 (23%), Positives = 24/93 (25%), Gaps = 2/93 (2%)
Frame = +3
Query: 555 PXXPXXLXXPXXXXPAXAXXDXXAXAPXPSPPXPXRLXXLXHPSXXSPPPXXXLXXXXXR 734
P P + P PA P P P PPP
Sbjct: 392 PPGPPAVPAPPTYPPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPPPPG 451
Query: 735 XXVL--PPPXXSQNXPXXXSXHYRXPXAPSPLP 827
+ PPP Q P Y P AP P P
Sbjct: 452 SSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPP 484
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +3
Query: 582 PXXXXPAXAXXDXXAXAPXPSPPXPXRLXXLXHPSXXSPPP 704
P P+ A P P PP P +L P PPP
Sbjct: 340 PRPVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPP 380
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +1
Query: 640 PXPPSHXVXLXCXTPXXPPPLLXXSSXLSXTAXVSSXRPXARKXHLXXXPXT 795
P PPSH + P PPP + A S P A K L P T
Sbjct: 432 PPPPSHPTPITSVAPAPPPP-----PPAAAAAAASQPSPQATKSPLPATPQT 478
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 647 PXPTXSXSXASPLXXLPPSXLXPRXXPXPXXCPPXAPXLAKXTSXGFXSLPXP 805
P PT + P PPS P P P PP P L + P P
Sbjct: 537 PSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPP 589
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = +2
Query: 569 PPXXPXXXPAGXXXSRXXSXCSXXLXPXPTXSXSXASPLXXLPPSXLXPRXXPXPXXCPP 748
PP P PA S S + L P + + +P PP + + P P PP
Sbjct: 712 PPPPPPPPPANR--SNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPP 769
Query: 749 XAP 757
AP
Sbjct: 770 QAP 772
>02_05_0868 + 32342967-32343915,32344389-32344447
Length = 335
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/74 (25%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = +3
Query: 633 PXPSPPXPXRLXXLXHPSXXSPPPXXXLXXXXXRXXVLPPPXXSQNXPXXXSXHYRXP-X 809
P P+PP P HP P + P Q P +R P
Sbjct: 56 PRPAPPPPHFFPQPYHPHYDGHPRRWLIYGGEAPPVAAPGRAFRQPAPAVPGRAFRQPGP 115
Query: 810 APSPLPTXRGXXRR 851
AP+P P RR
Sbjct: 116 APAPSPAPAPPRRR 129
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/51 (25%), Positives = 17/51 (33%)
Frame = +3
Query: 552 SPXXPXXLXXPXXXXPAXAXXDXXAXAPXPSPPXPXRLXXLXHPSXXSPPP 704
SP P P A + P P P P ++ + P PPP
Sbjct: 220 SPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPP 270
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 8.5
Identities = 24/91 (26%), Positives = 26/91 (28%)
Frame = +3
Query: 555 PXXPXXLXXPXXXXPAXAXXDXXAXAPXPSPPXPXRLXXLXHPSXXSPPPXXXLXXXXXR 734
P P P P P SPP P + P SPPP +
Sbjct: 1202 PPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVIS-PPPPEKSPPPAAPVILSPPA 1260
Query: 735 XXVLPPPXXSQNXPXXXSXHYRXPXAPSPLP 827
LPPP P P AP LP
Sbjct: 1261 VKSLPPPAPVSLPPPPVKS--LPPPAPVSLP 1289
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Frame = +3
Query: 606 AXXDXXAXAPXPSPPXPXRLXXLXHPSXXSPPPXXXLXXXXXRXXVLP-PPXXSQNXPXX 782
A D P P P P L P PP + + P PP + P
Sbjct: 1115 ALADQNELPPLPDGPPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPP 1174
Query: 783 XSXHYRXPXAPSPLPT 830
S P P PLP+
Sbjct: 1175 LSPSLPPPPPPPPLPS 1190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,300,414
Number of Sequences: 37544
Number of extensions: 279804
Number of successful extensions: 1376
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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