Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H09
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   1.4  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   1.4  
Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    28   10.0 

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +2

Query: 647 PXPTXSXSXASPLXXLPPSXLXPRXXPXPXXCPPXAP 757
           P P        PL   PP    P+  P P  CPP  P
Sbjct: 31  PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPP 67


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/41 (29%), Positives = 15/41 (36%)
 Frame = +2

Query: 647 PXPTXSXSXASPLXXLPPSXLXPRXXPXPXXCPPXAPXLAK 769
           P P        P    PP  + P   P P  CPP  P + +
Sbjct: 50  PMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPR 90


>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +2

Query: 653 PTXSXSXASPLXXLPPSXLXPRXXPXPXXCPPXAP 757
           P    + ASPL   PP    P   P P   PP  P
Sbjct: 625 PVDPVTEASPLNPQPPPPPSPSPEPEPEPKPPVTP 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,000,052
Number of Sequences: 27780
Number of extensions: 155350
Number of successful extensions: 537
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)