Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H05
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0302 - 2286171-2286341,2286747-2286968                           29   4.5  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   6.0  
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755...    29   6.0  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   6.0  
06_01_1000 - 7778907-7780721                                           28   7.9  

>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 81  RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 182
           RL+R RK +  D+   G  + +GEKLE  + +E+
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 73  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 219
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
            27175673-27175753,27175838-27175894,27176103-27176202,
            27176280-27176350,27176427-27176567,27176657-27176863,
            27177442-27177612,27177735-27177815,27177887-27177940,
            27178040-27178154,27178302-27178441,27178976-27179197,
            27179278-27179376,27179461-27179580,27179776-27179981,
            27180072-27180249,27180426-27180486,27180587-27180696,
            27180765-27180896,27181124-27181165,27181592-27181762,
            27181806-27181808,27181848-27181974,27182130-27182164,
            27182982-27183083,27183167-27183224,27183314-27183415,
            27183513-27183659,27183744-27183880,27183973-27184122,
            27184234-27184393,27184930-27185075,27185162-27185305,
            27185535-27185663,27186376-27186420,27187103-27187192,
            27187473-27187475
          Length = 1506

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 704  PPSPXXSXTSTRSSNPXFQTPTTPDLTSISINPLTPX*KEFAPG*SLRCHQRLHQ 540
            P SP    T      P  +    PD+T IS+NP  P  +E  P  SL   Q+ +Q
Sbjct: 1053 PKSPFQLKTPENGVAPYGEVKPLPDITPISLNPKEPETEE-KPQKSLNEKQQENQ 1106


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -1

Query: 240  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 61
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 60   ILHSF 46
            +LHSF
Sbjct: 1408 LLHSF 1412


>06_01_1000 - 7778907-7780721
          Length = 604

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -1

Query: 609 SPDAVXEGVRAGLKPPLSSEAPSAYLTPSSLGMXKGVSPPIFK*MM--NHKLR----ALL 448
           SP A      + L   LS  APSA    + L     +S P++  +   +H+L     ALL
Sbjct: 27  SPAAAAPTAASLLAELLSDPAPSASAL-ALLRDTPSLSAPLYSLLAAPSHELTRASLALL 85

Query: 447 VVIPRILRSPPPTHPLIEDVV 385
           + +P   R PPP+ PL+  ++
Sbjct: 86  LALPARHRVPPPSAPLLSAIL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,245,285
Number of Sequences: 37544
Number of extensions: 405090
Number of successful extensions: 1148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)