Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_H03
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-22|CAO82055.1|  158|Caenorhabditis elegans Hypothetical...    31   0.95 
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    30   2.2  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        30   2.2  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    24   2.9  
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    29   5.1  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    29   5.1  

>AL161712-22|CAO82055.1|  158|Caenorhabditis elegans Hypothetical
           protein Y66D12A.16a protein.
          Length = 158

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
 Frame = +3

Query: 318 PSATCADSQDILPPCKLLTATNLTSH-HANYNFTGSTSLTR----CYSHTEEANREHLSS 482
           PS+   D +D+    +    +   ++ +A  +F+ S  L+R      S  +  +   L S
Sbjct: 14  PSSDSEDQKDVKKANQAARDSYYGAYSYATQDFSSSRGLSRDMEQLKSPAKSESNGTLRS 73

Query: 483 THKHALHRKNLHPPAEPEHRRIARHERTGRLILQVTTTSECVNFSSPRKLAC 638
            H+    R+  H     EH R     R  R I  V T  E +   S R +AC
Sbjct: 74  EHQWRDKRRENHRRPLKEHHRRNETRRDYRSISAVETVHETIKIESRRTVAC 125


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +1

Query: 388 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 549
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +1

Query: 388 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 549
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 463 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 558
           T   C    +T  T  TC+   NP T  S  T
Sbjct: 83  TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114



 Score = 23.8 bits (49), Expect(2) = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 313 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 411
           S L + V   +TF      L QQ+L  TT+T++
Sbjct: 10  SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 306 AEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 437
           A + P+ T   S  + PP    TA   + +    NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +1

Query: 385 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDT 558
           LP TT+ T+    P   + +   +KPT       T    T K       P T   P T
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTT 648


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 373 PQQILPATTQTTILRV-PPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 549
           P  + PA +  T+    PP+   + P+L +PT    Q   S + +  +    +N   AA+
Sbjct: 250 PAPVAPAPSIETLTSTSPPVTQQLAPSLSEPTFQVIQTEESKNMSMDSV---KNVVDAAA 306

Query: 550 PDTNAPDVLSYRSRRLQNV 606
               AP  LS +S RL +V
Sbjct: 307 LSAPAPAPLS-QSDRLNHV 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,252,864
Number of Sequences: 27780
Number of extensions: 392010
Number of successful extensions: 1304
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1301
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)