Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G19
         (767 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l...   104   3e-21
UniRef50_A7AQQ7 Cluster: HECT-domain (Ubiquitin-transferase) con...    35   2.6  
UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   4.5  

>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
           latent virus|Rep: Coat protein - Bombyx mori Macula-like
           latent virus
          Length = 237

 Score =  104 bits (249), Expect = 3e-21
 Identities = 49/54 (90%), Positives = 49/54 (90%)
 Frame = -3

Query: 693 IIKSPXPNTNHPRXNIHFHQSPDAVXEGVRAGVKASVVIRGSISVSHPLVTGHG 532
           IIKSP P TNHPR NIHFHQS DAV EGVRAGVKASVVIRGSISVSHPLVTGHG
Sbjct: 184 IIKSPIPYTNHPRLNIHFHQSADAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 237


>UniRef50_A7AQQ7 Cluster: HECT-domain (Ubiquitin-transferase)
            containing protein; n=1; Babesia bovis|Rep: HECT-domain
            (Ubiquitin-transferase) containing protein - Babesia
            bovis
          Length = 4221

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -3

Query: 732  SHPPXGXXGTSXXIIKSPXPNTNHPRXNIHFHQSPDAVXEGVRAGVKASVVIRGSISVSH 553
            +HPP G  G    +I S  P    PR N+    S     +   A  + SVV  G+++V H
Sbjct: 2712 AHPPTGYTGEVLNLIASSLPRLQLPR-NVPPDSSDHMAEQRGAATAEGSVVEEGNVNVIH 2770

Query: 552  P 550
            P
Sbjct: 2771 P 2771


>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 4.5
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 283 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 170
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 611,274,234
Number of Sequences: 1657284
Number of extensions: 10810589
Number of successful extensions: 29515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29497
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64204279620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)