Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G16
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.1  
03_01_0515 - 3864796-3865425                                           29   3.7  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.9  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/76 (23%), Positives = 21/76 (27%)
 Frame = +3

Query: 393 PXXXPXPPCXSRXXLXXCXPLXXXPPXPPXVXFCCXXPLXXXAXXXLXXPPXGXXPPXXX 572
           P   P PP   +       P    PP PP + +    P           PP    PP   
Sbjct: 58  PPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPP 117

Query: 573 XXXAPXXAXXXXXPPP 620
               P        PPP
Sbjct: 118 PSAPPPPPPPPTQPPP 133


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/77 (27%), Positives = 21/77 (27%)
 Frame = +3

Query: 393 PXXXPXPPCXSRXXLXXCXPLXXXPPXPPXVXFCCXXPLXXXAXXXLXXPPXGXXPPXXX 572
           P   P P   S        PL   PP PP V      P           PP    PP   
Sbjct: 49  PPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPP-----PLPPPPPPPAASPPPPP 103

Query: 573 XXXAPXXAXXXXXPPPP 623
               P        PPPP
Sbjct: 104 PSPPPPSPVKSSPPPPP 120


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = +3

Query: 465 PPXPPXVXFCCXXPLXXXAXXXLXXPPXGXXPPXXXXXXAPXXAXXXXXPPPP 623
           PP PP        P           PP G  PP       P        PPPP
Sbjct: 315 PPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,973
Number of Sequences: 37544
Number of extensions: 184519
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)