Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_G09
(804 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655... 31 1.4
12_02_0715 - 22453747-22453935,22454347-22454457,22454514-224545... 30 2.5
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 30 2.5
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 30 2.5
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 29 4.3
04_01_0318 - 4279228-4279279,4279670-4279935,4280208-4280322,428... 29 4.3
03_05_0183 - 21681673-21682524 29 4.3
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 28 7.6
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 28 7.6
08_02_0812 - 21444112-21444273,21444374-21444488,21445369-214454... 28 10.0
>03_05_0088 +
20664580-20664696,20664796-20665218,20665297-20665518,
20665597-20666058,20666140-20666300,20666422-20666973,
20667056-20667125,20667141-20667226,20667306-20667673,
20668002-20668018
Length = 825
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 508 VSRRSKPSSHSLLMGEQSNAWRILLRNDRKSRHRRIKKQRRYERLAATSQLSWWVTFLAP 687
V +P++ ++G SN + R + H+ I+K E+ A + + W TFLA
Sbjct: 74 VDASGRPTAPRTVIGRWSNCCGLAARENFGILHKDIRKVTEAEKERAWTAMEKWFTFLAE 133
Query: 688 LAKNSL 705
AK+ L
Sbjct: 134 -AKDRL 138
>12_02_0715 -
22453747-22453935,22454347-22454457,22454514-22454572,
22454893-22455067,22455255-22455307,22455670-22455739,
22457044-22457218,22457639-22457703,22458196-22460826
Length = 1175
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 584 AMIGRADIEGSKSNVAMNAWLPQASYPGG*LFWHLLLKTLYTKGSIGRAFAVPMRTEHLD 763
A+ G A I + + ++A + + Y G W+ L+ G I AF+ EH D
Sbjct: 452 AISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKD 511
Query: 764 QXTFGPLL 787
+ T+ L+
Sbjct: 512 EITWNGLV 519
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 21 TNHHGAGLSLNRSQHDAALPSTTPRQERKSSTXY 122
+ HG+G + N+ H+ P+T PRQ RK Y
Sbjct: 649 SGRHGSGRTANK--HERPAPATRPRQRRKRKYLY 680
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +3
Query: 78 PSTTPRQERKSSTXYSEPRXRTELYPDLRSRDARVKKKTDSID 206
PS TP ER S+ PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 433 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 335
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 27 HHGAGLSLNRSQHDAALPSTTPRQERKSSTXYSEPRXRTEL-YPDLRSRDARVKKKTDSI 203
HH + + + S LPS T K++T S+ + P L R+ R +K+ +
Sbjct: 357 HHASSVRSSFSNSRLCLPSRTTNPPPKNATSNSKTEAASSFTRPSLHWRETRARKEPGVV 416
Query: 204 DLRD 215
D D
Sbjct: 417 DPHD 420
>04_01_0318 -
4279228-4279279,4279670-4279935,4280208-4280322,
4280604-4280657,4281259-4282466
Length = 564
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 562 NAWRILLRNDRKSRHRRIKKQRRYERLAATSQLSWWVTFLAPLAKNSLY 708
N +L RN K R +++ +RR R T+ +W+ F L+ +LY
Sbjct: 448 NPNEMLARNTPKGRRGKVQTRRRRRRAGVTTG-KYWMGFFLALSAAALY 495
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 645 SQAFIATLLFDPSMSALPIIAKQNSPS 565
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 346 ASLAESGKDMLTVEPRXSGGSKQCDFTSRVSHSKRETRRRSPFGS 212
A+ A +GK + E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +1
Query: 526 PSSHSLLMGEQSNAWRI-LLRNDRKSRHRRIKKQRRYERLAATSQLSWWV 672
P+++ + + + SN WRI LL D+K+ H I K + A +L WV
Sbjct: 237 PAANIVTLYDVSNIWRIPLLLRDQKA-HEAILKVLNLDSFARGPKLDEWV 285
>08_02_0812 -
21444112-21444273,21444374-21444488,21445369-21445487,
21446589-21446757,21447082-21447233,21447349-21447492,
21447575-21447687,21448265-21448316,21448408-21448494
Length = 370
Score = 27.9 bits (59), Expect = 10.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -3
Query: 115 VDDFRSWRGVVLGRAASCCDLLRLSPAPW 29
+DD +SW V++ + + +S APW
Sbjct: 88 IDDLKSWTSVLISVTSYALGIFLISKAPW 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,176,974
Number of Sequences: 37544
Number of extensions: 475726
Number of successful extensions: 1244
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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