Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G08
         (798 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y08415-1|CAA69692.1|  502|Homo sapiens nicotinic acetylcholine r...    33   1.6  
X53179-1|CAA37320.1|  502|Homo sapiens precursor peptide (AA -25...    33   1.6  
U62437-1|AAB40115.1|  502|Homo sapiens nicotinic acetylcholine r...    33   1.6  
BC075041-1|AAH75041.1|  502|Homo sapiens cholinergic receptor, n...    33   1.6  
BC075040-1|AAH75040.1|  502|Homo sapiens cholinergic receptor, n...    33   1.6  
AL592078-3|CAI16184.1|  502|Homo sapiens cholinergic receptor, n...    33   1.6  
AJ001935-1|CAA05108.1|  504|Homo sapiens CHRNB2 protein.               33   1.6  
AF077186-1|AAD45422.1|  502|Homo sapiens neuronal nicotinic acet...    33   1.6  

>Y08415-1|CAA69692.1|  502|Homo sapiens nicotinic acetylcholine
           receptor beta2 subunit precursor protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>X53179-1|CAA37320.1|  502|Homo sapiens precursor peptide (AA -25 to
           477) protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>U62437-1|AAB40115.1|  502|Homo sapiens nicotinic acetylcholine
           receptor beta2 subunit precursor protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>BC075041-1|AAH75041.1|  502|Homo sapiens cholinergic receptor,
           nicotinic, beta 2 (neuronal) protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>BC075040-1|AAH75040.1|  502|Homo sapiens cholinergic receptor,
           nicotinic, beta 2 (neuronal) protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>AL592078-3|CAI16184.1|  502|Homo sapiens cholinergic receptor,
           nicotinic, beta 2 (neuronal) protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>AJ001935-1|CAA05108.1|  504|Homo sapiens CHRNB2 protein.
          Length = 504

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


>AF077186-1|AAD45422.1|  502|Homo sapiens neuronal nicotinic
           acetylcholine receptor beta 2 protein.
          Length = 502

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSMFE---SGAWDVTDL 623
           +++ ++P D   CT KF    ++  E+D V+   + S+ +   SG WD+  L
Sbjct: 157 IEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSEVASLDDFTPSGEWDIVAL 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,284,873
Number of Sequences: 237096
Number of extensions: 1408884
Number of successful extensions: 4589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4581
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)