Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G08
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    30   1.7  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    30   1.7  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    30   1.7  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    30   1.7  
AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical ...    29   2.9  

>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 796 RLDIXTPIFMQLDNWPNDMXTCTFKFGFRMHNSDEMD 686
           RL + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 796 RLDIXTPIFMQLDNWPNDMXTCTFKFGFRMHNSDEMD 686
           RL + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 796 RLDIXTPIFMQLDNWPNDMXTCTFKFGFRMHNSDEMD 686
           RL + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 796 RLDIXTPIFMQLDNWPNDMXTCTFKFGFRMHNSDEMD 686
           RL + +P  + L  +P D  TC   F    HNS+E++
Sbjct: 152 RLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188


>AC006816-3|AAK85510.3|  508|Caenorhabditis elegans Hypothetical
           protein Y71D11A.5 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -3

Query: 796 RLDIXTPIFMQLDNWPNDMXTCTFKFGFRMHNSDE--MDFVID--KRIYSMFESGAWDVT 629
           RL +  P  M L  +P D  TC+  F    +N+DE  MD+ ++  +++    E   +++ 
Sbjct: 183 RLKLQGPCIMDLTKFPFDNVTCSLTFESFNYNTDEVKMDWSVNGVQKMRDKMELADYELV 242

Query: 628 DL 623
           D+
Sbjct: 243 DI 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,517
Number of Sequences: 27780
Number of extensions: 217144
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)