Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G08
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    33   0.004
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    29   0.050
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   1.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 757 NWPNDMXTCTFKFGFRMHNSDEMDFVIDKRIYSM 656
           +WP D   C   FG  +H+ +E++  +DK+ + M
Sbjct: 175 SWPYDTHRCRINFGSWVHSGEEVNIFLDKKGFHM 208


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -3

Query: 754 WPNDMXTCTFKFGFRMHNSDEMDFVI--DKRIYSM---FESGAWDVTDL 623
           +P D  TC  KFG    N D++   +  +K    +   ++SG WD+ ++
Sbjct: 158 FPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIINV 206


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 796 RLDIXTPIFMQLDNWPNDMXTCTFKFG 716
           RL I     M L+N+P D   C  +FG
Sbjct: 123 RLTIKAGCPMNLENFPMDTQRCPLQFG 149


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 317 SLISNLSNTCDLTPLPEWSCEQSAWWGACGRVL 219
           SL +N   +  LTP P W+  ++   GACG  +
Sbjct: 98  SLDTNRGGSPKLTPYPNWAQNKA---GACGSAI 127


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -3

Query: 754 WPNDMXTCTFKFGFRMHNSDEM---DFVIDKRIYSMFESGA-WDVTDLSSAVQSQD 599
           WP D+  CT       H S+E+       ++ +  M+ +   W++  +S +  + D
Sbjct: 166 WPYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTID 221


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 624 CPVRCRARTVARWKLAWQCS 565
           C VRC A +  RW   W+ S
Sbjct: 19  CSVRCSAASGLRWFEIWRDS 38


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 333 WRAAAACTRDTRGALPASPSRLDT 404
           W    ACT  T G +  +PS  DT
Sbjct: 487 WVFTLACTAGTLGIIFQAPSLYDT 510


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 754 WPNDMXTCTFKFGFRMHNSDEMDFVID 674
           +P+D   C  +     H +DEM F  D
Sbjct: 170 YPHDTQECKLQMESLSHTTDEMIFQWD 196


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 769 MQLDNWPNDMXTCTFKFGFRMHNSDEMD 686
           + ++ +P D  TC  KFG   ++  ++D
Sbjct: 151 IDVEYFPFDEQTCVMKFGSWTYDGFQVD 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,700
Number of Sequences: 438
Number of extensions: 2410
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)