Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G06
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   115   7e-27
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   112   7e-26
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.066
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    29   1.1  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  115 bits (277), Expect = 7e-27
 Identities = 56/85 (65%), Positives = 65/85 (76%)
 Frame = -2

Query: 576 ITEASXVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMXWLLAREVLRLRGVLPRDQ 397
           I EAS VNIPVIALC+TDS L  VDIAIP N K   SIGL+ +LLAREVLR+RG L R  
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSA 195

Query: 396 RWDVVVDLFFYRDPEESEKDEQQAK 322
            WDV+ DL+FYRDPEE E++E+  K
Sbjct: 196 PWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  112 bits (269), Expect = 7e-26
 Identities = 54/83 (65%), Positives = 64/83 (77%)
 Frame = -2

Query: 576 ITEASXVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMXWLLAREVLRLRGVLPRDQ 397
           I EAS VNIPVIALC+TDS L  VD+AIP N K   SIGL  +LLAREVLRLRG + R  
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTT 196

Query: 396 RWDVVVDLFFYRDPEESEKDEQQ 328
            W+V+ DL+FYRDPEE E++E+Q
Sbjct: 197 AWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.066
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 618 LLECIGPLHKTINPITEASXVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMXWLLA 439
           L+  + PL    +   EA   ++P I + +TD+  R V   IP N  S     L+  LL+
Sbjct: 182 LMVILNPLENK-SACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLS 240

Query: 438 R 436
           R
Sbjct: 241 R 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 573 TEASXVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,131
Number of Sequences: 5004
Number of extensions: 48499
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)