Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G06
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   116   3e-26
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   113   2e-25
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    29   4.6  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   6.1  
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    29   6.1  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  116 bits (278), Expect = 3e-26
 Identities = 50/88 (56%), Positives = 67/88 (76%)
 Frame = -2

Query: 579 PITEASXVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMXWLLAREVLRLRGVLPRD 400
           PI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG + WLLAR VL++RG +   
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPG 196

Query: 399 QRWDVVVDLFFYRDPEESEKDEQQAKEQ 316
            +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 197 HKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  113 bits (271), Expect = 2e-25
 Identities = 48/84 (57%), Positives = 64/84 (76%)
 Frame = -2

Query: 579 PITEASXVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMXWLLAREVLRLRGVLPRD 400
           PI E++  NIP IA C+TDSP+R+VDI IP N K   SIG + WLLAR VL++RG +   
Sbjct: 137 PIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPG 196

Query: 399 QRWDVVVDLFFYRDPEESEKDEQQ 328
            +WDV+VDLFFYRDPEE+++ E++
Sbjct: 197 HKWDVMVDLFFYRDPEEAKEQEEE 220


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 422 SLNTSRANNXHIKPIE-WEDLVLHGIAMSTNLSGESVLHKAITGMLTYEASVXGLMVLCK 598
           S+ T +ANN   K I  +++LV+  + +  NLS + +  KA    +     + GL+VLC 
Sbjct: 326 SMLTVKANNGEGKEISRFQNLVI--VDLKNNLSKKKM--KAFIPQVVRTTYIGGLLVLCA 381

Query: 599 GPI 607
           G I
Sbjct: 382 GSI 384


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 208 TRCSSCFWSTPCPRRMVCPGTR*VEHN 128
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>02_05_1052 + 33770355-33773981,33774217-33774336,33774880-33774996,
            33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +2

Query: 368  KNKSTTTSQRWSRGSTPRSLNTSRANNXHIKPIEWEDLVLHGIAMSTNLSGESVLHKAIT 547
            KN    T +  SRG++PR    S       K +++ +     I M+T   G S    A +
Sbjct: 933  KNNRAMTVKIPSRGASPRRRLASEGFGTIYKSMDFSEKDRTSINMATPSRGMSPRRTARS 992

Query: 548  GMLTYEASVXGLMVLCKGPIHS 613
            G++    S+      C GPI S
Sbjct: 993  GIVDMSKSM-DFSEKCNGPISS 1013


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,508,326
Number of Sequences: 37544
Number of extensions: 356991
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)