Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_G02
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    28   1.8  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.4  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    26   7.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.4  

>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 430 ILSPFSSPPSIEQPKPRQRQHSNSEPELVP 341
           I + ++SP SI +P P Q+  S+++P  VP
Sbjct: 189 ISTAYASPTSINEPLPDQQLSSSTKPIKVP 218


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 427 LSPFSSPPSIEQPKPRQRQHSNSEPELVPVMKK 329
           L+PFS  P  E+P P ++  ++ +  L  V KK
Sbjct: 5   LNPFSKKPKDEEPLPLEQYEASEQKILGLVTKK 37


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 211 DPTLVSNLLKESLAKPVPISVPTEKKSPIE 122
           DP  ++  L ESLA    +   T++KSP+E
Sbjct: 825 DPMRLAQQLLESLAPDFALHENTQQKSPVE 854


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 144  VGTDIGTGFARLSFSKLETRVGSVSMPLSAR 236
            +GT  G   ARLSFS L +R    S+ L +R
Sbjct: 1461 IGTGRGFATARLSFSLLFSRFAGPSIYLGSR 1491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,746,203
Number of Sequences: 5004
Number of extensions: 28078
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)