Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_G02
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 30 1.8
05_03_0040 - 7646525-7647775 30 2.4
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 29 3.2
09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157 29 4.2
01_01_1110 + 8789741-8790616 29 5.6
09_04_0541 + 18437075-18440062 28 7.4
07_03_1067 + 23728642-23728690,23728832-23729010 28 9.8
02_04_0268 + 21435231-21435240,21435330-21435558,21435778-214358... 28 9.8
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275... 28 9.8
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 451 KEMQPPAILSPFSSPPSIEQPKPRQRQHSNSEPE 350
KE +PP +P SSPPS E+ P S PE
Sbjct: 911 KESEPPPTPTPKSSPPSHEEYVPPSPAKSTPPPE 944
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 451 KEMQPPAILSPFSSPPSIEQPKPRQRQHSNSEPE--LVPVMKKIDETPGYE 305
+E +PP +P SSPPS E+ P S PE L P I+ +P E
Sbjct: 961 EESEPPPSPTPKSSPPSHEEYVPPSPAKSTPPPEKPLPPHTPTINSSPPSE 1011
>05_03_0040 - 7646525-7647775
Length = 416
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/70 (25%), Positives = 24/70 (34%)
Frame = -3
Query: 550 RPKHEPRHNPPPVLIQEQXXXXXXXXXXXSAAIKEMQPPAILSPFSSPPSIEQPKPRQRQ 371
+PK EP+ P P E E +P P P +PKP +
Sbjct: 225 KPKPEPKPKPEPKPYPEPKPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPKPEPKP 284
Query: 370 HSNSEPELVP 341
H EP+ P
Sbjct: 285 HPKPEPKPEP 294
Score = 27.9 bits (59), Expect = 9.8
Identities = 18/72 (25%), Positives = 24/72 (33%)
Frame = -3
Query: 547 PKHEPRHNPPPVLIQEQXXXXXXXXXXXSAAIKEMQPPAILSPFSSPPSIEQPKPRQRQH 368
PK +P+ +P P E E +P P P +PKP +
Sbjct: 58 PKPKPKPHPKPTPKPEPKPEPEPKPVPEPEPKPEPKPEPKPEPKPEPKPYPEPKPEPKPE 117
Query: 367 SNSEPELVPVMK 332
EPE P K
Sbjct: 118 PKPEPEPKPEPK 129
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 445 MQPPAILSPFSSPPSIEQPKPRQRQHSNSEPELVP 341
++PP LSPFS+PP E + R HS S P
Sbjct: 34 LRPPHRLSPFSAPPP-EPHRLTYRTHSTSSSSRTP 67
>09_02_0109 - 4372621-4373024,4373498-4373760,4373988-4374157
Length = 278
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 424 SPFSSPPSIEQPKPRQRQHSNSEPELVPVMKKIDETPGYENIMKENQRIIK 272
S S+PP ++ K +R+ S P L P + + +PG+ ++ +R ++
Sbjct: 61 SGLSAPPWSQRVKKLRRKPSRPSPALAPAARHLLASPGHGGRLERRRRCMQ 111
>01_01_1110 + 8789741-8790616
Length = 291
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 415 SSPPSIEQPKPRQRQHSNSEPELVPVMKKIDETPGYE 305
S+PP+I + P +S P M+K +PGY+
Sbjct: 7 STPPAISRADPSSSSRGHSLPTDADSMRKARRSPGYQ 43
>09_04_0541 + 18437075-18440062
Length = 995
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -3
Query: 460 AAIKEMQPPAILSPFSSPPSIEQPK---PRQRQHSNSE 356
A + +Q P + + PP +QP+ PRQRQH ++
Sbjct: 63 AFVSALQSPYVSPRLADPPPPQQPQPQTPRQRQHRETK 100
>07_03_1067 + 23728642-23728690,23728832-23729010
Length = 75
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 439 PPAILSPFSS-PPSIEQPKPRQRQHSN 362
PPA P PP QP P+Q+QHS+
Sbjct: 41 PPAGYPPQQGYPPPYAQPPPQQQQHSS 67
>02_04_0268 +
21435231-21435240,21435330-21435558,21435778-21435898,
21435992-21436264
Length = 210
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 415 SSPPSIEQPKPRQRQHSNSEPELVPVMKKIDETPGYENIMKENQ 284
SS + PKP ++ +SNS+P P K +E G E E+Q
Sbjct: 111 SSKSNKSNPKPSKQSNSNSKP-AKPPQPKDEEDSGPEGTEDEDQ 153
>01_06_0231 +
27727110-27727206,27727315-27727447,27727491-27727553,
27729069-27729140,27729640-27729783,27729868-27729990,
27730102-27730157,27730249-27730635,27731176-27731366,
27731498-27731630,27731715-27731869,27732188-27732379,
27732490-27732750
Length = 668
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 460 AAIKEMQPPAILSPFSSPPSIEQPKPRQRQ 371
+A KE++ P LSP SSPP P R ++
Sbjct: 280 SAFKEIKVPPPLSPPSSPPMSSGPPQRSKR 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,539
Number of Sequences: 37544
Number of extensions: 193800
Number of successful extensions: 875
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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