Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F24
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 31 0.93
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 31 1.2
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306... 30 2.1
01_06_0146 + 26969011-26969995,26970878-26970930 30 2.1
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 2.8
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 29 3.8
02_05_0686 - 30900748-30902167,30903442-30904742 29 3.8
03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105 29 5.0
03_03_0188 + 15269347-15270213 28 8.7
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.5 bits (68), Expect = 0.93
Identities = 25/91 (27%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Frame = -3
Query: 622 KLPPAXXPXXXGPAPP--SXRAXXAXXXXPIIEXRXPXXPXPPXPXXXXXGXRRLXARXP 449
K PPA P P PP R P+ P P PP P R + P
Sbjct: 114 KTPPALSPVPPPPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPP 173
Query: 448 RXARXLAGPSPXRPXVGXRPSXXPXXXPRXP 356
+ P P P PS P R P
Sbjct: 174 -----VVQPKPQPPPSLQPPSPPPPPPTRPP 199
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Frame = -2
Query: 647 GPRXVXPQXITPRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPXAPXPPX--AXASXRR 474
GP P + P PG + P P P+ P P PP A A+ R
Sbjct: 688 GPPPPPPPPLPPANRTNGPGVPSA-PPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRN 746
Query: 473 XPAXXPXPXPXAXXRGAQP 417
PA P P A P
Sbjct: 747 PPAPPPPPLMTGKKAPAPP 765
>06_01_0430 -
3058832-3058952,3059590-3059795,3060103-3060294,
3061241-3061287,3062233-3062455
Length = 262
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -2
Query: 614 PRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPXAPXPPXAXAS 483
PR G P PR A HH PT AP P A +S
Sbjct: 29 PRVGQPSHGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSS 72
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/69 (28%), Positives = 23/69 (33%)
Frame = -2
Query: 644 PRXVXPQXITPRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPXAPXPPXAXASXRRXPA 465
P + PQ TP A A P SP + P P+ AP PP P
Sbjct: 34 PPPISPQNPTPPPPPLPASAAAPTTP-SPNHSGDPSRPIPSQAPAPPPPPTADPSPPLPH 92
Query: 464 XXPXPXPXA 438
P P A
Sbjct: 93 DNRTPQPRA 101
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/73 (32%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Frame = -2
Query: 650 PGPRXVXPQXITPRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPX----APXPPXAXAS 483
P P P TP P PR PR HHR P P P PP A S
Sbjct: 58 PPPPLPTPTVTTPTPPPPPPA------PRPPRR----HHRIPPPPPPLLPTPPPPPASIS 107
Query: 482 XRRXPAXXPXPXP 444
P P P P
Sbjct: 108 PTPAPPLPPPPAP 120
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +2
Query: 422 GPREXXRXAXGAGXXPAXAGXXXXRXGGXGXXGXSXFDDGXXXRGXXSAXXGXRRPXXRR 601
G R G G P G GG G G +DDG RG G R
Sbjct: 53 GGRGGGYGGGGGGGGPPYYGGGGGGGGGGGGQGRGYYDDGGDGRGYQRGMEGGGGRGGYR 112
Query: 602 XVGGG 616
G G
Sbjct: 113 GDGDG 117
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/73 (26%), Positives = 20/73 (27%)
Frame = -1
Query: 684 ARXAPPXXXRPARAPXXXATXNYPPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPX 505
A APP P AP PPP + P P P P P
Sbjct: 322 AAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPP 381
Query: 504 PPXRXXXXPAXAG 466
P PA G
Sbjct: 382 PKGGASRPPAAPG 394
>03_02_0402 - 8151448-8151669,8151916-8152417,8154537-8155105
Length = 430
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = -2
Query: 539 HHRXPTXPXAPXPPXAXASXRRXPAXXPXPXP 444
HH P+ P P PP + S A P P P
Sbjct: 33 HHHQPSSPPPPPPPESSPSHYVFAAATPYPPP 64
>03_03_0188 + 15269347-15270213
Length = 288
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/65 (26%), Positives = 19/65 (29%)
Frame = -1
Query: 669 PXXXRPARAPXXXATXNYPPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPXPPXRX 490
P P P T N PP R RR P L + + P PP
Sbjct: 69 PSQAPPPHPPPPAPTSNNKPPKKRPRASRRPPTTVLTTDTSNFRAMVQEFTGFPAPPFAA 128
Query: 489 XXXPA 475
PA
Sbjct: 129 APPPA 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,158
Number of Sequences: 37544
Number of extensions: 192182
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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