Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F24
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.4
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.4
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.4
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.5
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.4
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 28 7.7
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 28 7.7
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 28 7.7
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 33.5 bits (73), Expect = 0.21
Identities = 21/87 (24%), Positives = 28/87 (32%)
Frame = -1
Query: 681 RXAPPXXXRPARAPXXXATXNYPPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPXP 502
R +P P AP + + PP RR R S P P
Sbjct: 348 RRSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIP 407
Query: 501 PXRXXXXPAXAGXXPAPXAXRXXSRGP 421
P R P+ + PAP + S+ P
Sbjct: 408 PARRRRSPSASKSPPAPKRAKSRSKSP 434
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = -3
Query: 658 PXGPGPGXLX--HXKLPPAXXPXXXGPAPPSXRAXXAXXXXPIIEXRXPXXPXPPXP 494
P PG G K PP P GP P A P E P P PP P
Sbjct: 132 PGAPGKGAAVPCEAKTPPPCKPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGP 188
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/74 (25%), Positives = 23/74 (31%)
Frame = -1
Query: 675 APPXXXRPARAPXXXATXNYPPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPXPPX 496
APP P AT PP T R + P P PS P P P
Sbjct: 308 APPATRAPPATRAPPATTRAPPATTRPAPASQPPVREPETPDSGYPSPAPQEPAHPSPSY 367
Query: 495 RXXXXPAXAGXXPA 454
P+ + P+
Sbjct: 368 PSPSYPSPSYPSPS 381
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = -1
Query: 615 PPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPXPPXRXXXXPAXAGXXPAPXAXRX 436
PPP+ P + PSS P P PP R P G P P R
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 435 XSRG 424
G
Sbjct: 326 GPPG 329
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 518 PXAPXPPXAXASXRRXPAXXPXPXPXAXXRGAQP 417
P AP PP S PA P P P + RG P
Sbjct: 555 PAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAP 588
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -2
Query: 518 PXAPXPPXAXASXRRXPAXXPXPXPXAXXRGAQP 417
P AP PP S PA P P P + RG P
Sbjct: 381 PAAPPPPTRVESHGLAPARPPPPPPSSGTRGIAP 414
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/64 (28%), Positives = 20/64 (31%)
Frame = -1
Query: 615 PPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPXPPXRXXXXPAXAGXXPAPXAXRX 436
PPP+ P + PSS P P PP R P G P P R
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 435 XSRG 424
G
Sbjct: 336 GPPG 339
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = -3
Query: 652 GPGPGXLXHXKLPPAXXPXXXGPAPPSXRAXXAXXXXPIIEXRXPXXPXPPXP 494
G G K PP P GP P A P E P P PP P
Sbjct: 137 GKGASAPCEAKTPPPCQPCPAGPPGPPGPDGPAGPAGPDGEAGSPAAPSPPGP 189
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.5
Identities = 26/98 (26%), Positives = 28/98 (28%), Gaps = 6/98 (6%)
Frame = -1
Query: 672 PPXXXRPARAPXXXATXNYPPPTXRRXXGRRXPXXALXXPRXXXPSSXXDXPXXPXPPX- 496
PP R R P + PP RR P P P P P PP
Sbjct: 140 PPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTP-PSPEPRNPPRTPPSPIPPPPPRL 198
Query: 495 -----RXXXXPAXAGXXPAPXAXRXXSRGPAXXXLXWG 397
R PAP R S+GP WG
Sbjct: 199 NSHDRRALRARRPMVHRPAPYGRRSISQGPGRNNDDWG 236
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -3
Query: 619 LPPAXXPXXXGPAP-PSXRAXXAXXXXPIIEXRXPXXPXPPXP 494
LPP P P+P P+ PII P P PP P
Sbjct: 323 LPPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPP 365
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/76 (23%), Positives = 23/76 (30%)
Frame = -2
Query: 644 PRXVXPQXITPRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPXAPXPPXAXASXRRXPA 465
P P P+ G+G+ P + P P P PP A P
Sbjct: 233 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 292
Query: 464 XXPXPXPXAXXRGAQP 417
P P RG+ P
Sbjct: 293 RAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/76 (23%), Positives = 23/76 (30%)
Frame = -2
Query: 644 PRXVXPQXITPRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPXAPXPPXAXASXRRXPA 465
P P P+ G+G+ P + P P P PP A P
Sbjct: 254 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 313
Query: 464 XXPXPXPXAXXRGAQP 417
P P RG+ P
Sbjct: 314 RAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/76 (23%), Positives = 23/76 (30%)
Frame = -2
Query: 644 PRXVXPQXITPRXXAXXPGAGAXLXPRSPRXAXXPHHRXPTXPXAPXPPXAXASXRRXPA 465
P P P+ G+G+ P + P P P PP A P
Sbjct: 239 PAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPP 298
Query: 464 XXPXPXPXAXXRGAQP 417
P P RG+ P
Sbjct: 299 RAGSPPPPPPPRGSPP 314
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = -3
Query: 658 PXGPGPGXLXHXKLPPAXXPXXXGPAPPSXRAXXAXXXXPIIEXRXPXXPXPPXP 494
P P P + PPA P G AP + P + P P PP P
Sbjct: 201 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPP 255
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = -3
Query: 658 PXGPGPGXLXHXKLPPAXXPXXXGPAPPSXRAXXAXXXXPIIEXRXPXXPXPPXP 494
P P P + PPA P G AP + P + P P PP P
Sbjct: 187 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPP 241
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = -3
Query: 658 PXGPGPGXLXHXKLPPAXXPXXXGPAPPSXRAXXAXXXXPIIEXRXPXXPXPPXP 494
P P P + PPA P G AP + P + P P PP P
Sbjct: 187 PPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPPPPPPP 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,411
Number of Sequences: 27780
Number of extensions: 118530
Number of successful extensions: 395
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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