Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F23
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      48   2e-06
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   2.5  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.3  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    26   5.8  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 46/194 (23%), Positives = 81/194 (41%), Gaps = 3/194 (1%)
 Frame = -1

Query: 735 VFIRTPGXVIGKHRKNHIPRVGDFNDPNXYMEGNTGHPVFATRYGKIAVNXCFGRHHVLN 556
           ++I   G + G +RK H+     F+    + +  +  P+F T +GK+ V  C+       
Sbjct: 104 IYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIFETSFGKLGVMICWDTAFPEV 158

Query: 555 WMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCYFTAAINRVGYEEFPNE 382
             +   NGA+++      +A    + Y   W++  +  A  NC    A NRVG +E  + 
Sbjct: 159 ARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANRVGTDEKLS- 212

Query: 381 FTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNRQIRDRRCYY 202
                          F+G S   GP G     L   ++G++   VDL+  + +R     +
Sbjct: 213 ---------------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAKPLRKNYYTF 257

Query: 201 MTQRL-DMYVNSLS 163
              R+ D+Y   LS
Sbjct: 258 FEDRMPDLYKRLLS 271


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 437 FVIAAFLASTFHMYSLPPSPAIVAD 511
           F+ AA  + + H+ S+PPSP +++D
Sbjct: 156 FIDAANSSDSCHLVSIPPSPQLLSD 180


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 554  QFKTWCRPKXMFTAILPYLVANTGWPVLPS 643
            +F T    K +FTA+ P+L A T + ++PS
Sbjct: 1521 RFPTRVLCKPVFTAVPPFLFAGTDFALIPS 1550


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 562 DVVPSEAXVHRDLAVSGREYRMAGVTFH 645
           DVVP  A   R L    + Y  AG TFH
Sbjct: 25  DVVPKTAANFRALCTGEKGYGYAGSTFH 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,117
Number of Sequences: 5004
Number of extensions: 61378
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)