Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F22
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   169   4e-43
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   166   4e-42
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    38   0.001
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    28   1.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.5  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  169 bits (411), Expect = 4e-43
 Identities = 83/150 (55%), Positives = 99/150 (66%)
 Frame = -1

Query: 770 ETPVXXFVIXITALRXAXLXKFXAHTRWYAYCGRFTPGAFTNQIQXAFRDLRXLIVLDPA 591
           E P    V+         + KF AHT   A  GRFTPG FTN I   +R+ R ++V DP 
Sbjct: 71  ENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPR 130

Query: 590 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 411
            D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG 
Sbjct: 131 ADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGT 190

Query: 410 LPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
           L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 191 LSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  166 bits (403), Expect = 4e-42
 Identities = 83/148 (56%), Positives = 98/148 (66%)
 Frame = -1

Query: 770 ETPVXXFVIXITALRXAXLXKFXAHTRWYAYCGRFTPGAFTNQIQXAFRDLRXLIVLDPA 591
           E P    VI         + KF AHT   A  GRFTPG FTN I   +R+ R +IV DP 
Sbjct: 72  ENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPR 131

Query: 590 QDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGV 411
            D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG 
Sbjct: 132 ADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGN 191

Query: 410 LPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
           + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 192 ISRTTAWEVMPDLYFYRDPEEIEREEEQ 219


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/65 (32%), Positives = 34/65 (52%)
 Frame = -1

Query: 629 FRDLRXLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 450
           F DL  +++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+ 
Sbjct: 179 FPDL--MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIA 236

Query: 449 WLLAR 435
            LL+R
Sbjct: 237 GLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
           N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,737
Number of Sequences: 5004
Number of extensions: 51758
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)