Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F20
         (1081 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       30   2.8  
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    29   4.8  
02_05_0002 - 24849189-24849825,24850267-24850328                       29   4.8  
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275...    29   8.4  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   8.4  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 899 GGGGGXXXXPPPPPXXXXXFFXFF 970
           GGGGG     PPPP     +F F+
Sbjct: 130 GGGGGGAYPTPPPPNPFLPYFPFY 153


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 884 FSNXXGGGGGXXXXPPPP 937
           FS+  GGGGG    PPPP
Sbjct: 48  FSSSSGGGGGGWPPPPPP 65


>02_05_0002 - 24849189-24849825,24850267-24850328
          Length = 232

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 969 KXKKKXXXXXGGGGGXXXXPPPPP 898
           K KK       GGGG    PPPPP
Sbjct: 200 KRKKPQPADTSGGGGHPHPPPPPP 223


>07_03_1691 -
           28726307-28726323,28726588-28726953,28727483-28727567,
           28728255-28728387,28729793-28730328
          Length = 378

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 939 GGGGGXXXXPPPPP 898
           GGGGG    PPPPP
Sbjct: 35  GGGGGAGPTPPPPP 48



 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 899 GGGGGXXXXPPPPP 940
           GGGGG    PPPPP
Sbjct: 35  GGGGGAGPTPPPPP 48


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 939 GGGGGXXXXPPPPP 898
           GGGGG    PPPPP
Sbjct: 90  GGGGGYGKPPPPPP 103



 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 899 GGGGGXXXXPPPPP 940
           GGGGG    PPPPP
Sbjct: 90  GGGGGYGKPPPPPP 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,682,794
Number of Sequences: 37544
Number of extensions: 288124
Number of successful extensions: 1080
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3222906096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)