Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F18
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.72 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.7  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   8.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = -1

Query: 831  PXXPXPAPXAPXXXRPXXXPPXP-PRXGXPPXXXP 730
            P  P PA   P    P   PP P P  G PP   P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = -1

Query: 831  PXXPXPAPXAPXXXRPXXXPPXPPRXGXPPXXXP 730
            P  P P+   P    P   PP P   G PP   P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
 Frame = -1

Query: 849  PRRXRXPXXPXPAPXAPXXXRPXXXPPXP-PRXGXPPXXXP 730
            P     P  P P+   P    P   PP P P  G PP   P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
 Frame = -1

Query: 831  PXXPXPAPXAPXXXRPXXXPPXP-PRXGXPPXXXP 730
            P  P P+  AP    P   PP P P    PP   P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP 1155



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -1

Query: 837  RXPXXPXPAPXAPXXXRPXXXPPXPPRXGXPP 742
            + P  P P+  AP    P   PP P     PP
Sbjct: 1020 KAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = -1

Query: 831  PXXPXPAPXAPXXXRPXXXPPXP-PRXGXPPXXXP 730
            P  P P+   P    P   PP P P    PP   P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -1

Query: 831 PXXPXPAPXAPXXXRPXXXPPXPP 760
           P  P P P  P    P   PP PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/44 (40%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
 Frame = +2

Query: 728 PGXXXGGXPXRGGXGGXXXGLXXXGA--XGA-GXGXXGXRXRRG 850
           PG   G    RGG GG   G    G    GA G G  G R  RG
Sbjct: 5   PGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRG 48


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
 Frame = -1

Query: 837 RXPXXPXPAPXAPXXX-RPXXXPPXPPRXGXPPXXXP 730
           + P  P PA   P     P   PP  P  G PP   P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,608
Number of Sequences: 5004
Number of extensions: 10059
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)