Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F18
(939 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.7
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 29 4.8
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 29 4.8
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 28 8.4
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 28 8.4
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 28 8.4
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -1
Query: 849 PRRXRXPXXPXPAPXAPXXXRPXXXPPXPPRXGXPPXXXPGR 724
PR P P +P P P P PPR G PP P R
Sbjct: 267 PRTGSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPPPPPR 304
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 822 PXPAPXAPXXXRPXXXPPXPPRXGXPP 742
P PA +P R PP PP G PP
Sbjct: 282 PPPAGGSPPPPRAGSPPPPPPPRGSPP 308
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -1
Query: 849 PRRXRXPXXPXPAPXAPXXXRPXXXPPXPPRXGXPPXXXPGR 724
PR P P +P P P P PPR G PP P R
Sbjct: 288 PRTGSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPPPPPR 325
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 822 PXPAPXAPXXXRPXXXPPXPPRXGXPP 742
P PA +P R PP PP G PP
Sbjct: 303 PPPAGGSPPPPRAGSPPPPPPPRGSPP 329
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = -1
Query: 849 PRRXRXPXXPXPAPXAPXXXRPXXXPPXPPRXGXPPXXXPGR 724
PR P P +P P P P PPR G PP P R
Sbjct: 273 PRTGSPPPPPTGSPPPP----PAGGSPPPPRAGSPPPPPPPR 310
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -1
Query: 822 PXPAPXAPXXXRPXXXPPXPPRXGXPP 742
P PA +P R PP PP G PP
Sbjct: 288 PPPAGGSPPPPRAGSPPPPPPPRGSPP 314
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Frame = -1
Query: 831 PXXPXPAPXAPXXXR--PXXXPPXPPRXGXPPXXXP 730
P P P P P P PP PP G PP P
Sbjct: 559 PIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPP 594
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 816 PAPXAPXXXRPXXXPPXPPRXGXPPXXXPGR 724
PA +P P PP PP PP P R
Sbjct: 306 PASTSPSGPAPSIPPPRPPALAPPPPVAPRR 336
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 816 PAPXAPXXXRPXXXPPXPPRXGXPPXXXPGR 724
PA +P P PP PP PP P R
Sbjct: 306 PASTSPSGPAPSIPPPRPPALAPPPPVAPRR 336
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = -1
Query: 849 PRRXRXPXXPXPAPXAPXXXRPXXXPPXPPRXGXPP 742
P+ P P P P P PP PP PP
Sbjct: 487 PQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPP 522
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 731 GXXXGGXPXRGGXGGXXXGLXXXGAXGAGXGXXG 832
G GG P RGG GG G GA G G
Sbjct: 7 GGRGGGFPARGGRGGGHGGGYPQEGYGAAAGGYG 40
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +2
Query: 731 GXXXGGXPXRGGXGGXXXGLXXXGAXGAGXGXXG 832
G GG P RGG GG G GA G G
Sbjct: 7 GGRGGGFPARGGRGGGHGGGYPQEGYGAAAGGYG 40
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,573,956
Number of Sequences: 27780
Number of extensions: 97347
Number of successful extensions: 1272
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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