Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F17
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 129 4e-31
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 126 4e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 35 0.012
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.4
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ... 27 3.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.6
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 129 bits (312), Expect = 4e-31
Identities = 61/93 (65%), Positives = 71/93 (76%)
Frame = -2
Query: 599 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 420
DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLAREVLR+
Sbjct: 128 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRV 187
Query: 419 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 321
RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 188 RGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 46.0 bits (104), Expect = 7e-06
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = -1
Query: 783 LXTHXNPXXCXVISSRPFGQRAVXKFAAHTGVRXLRDVSHQVXLXTRSKLHFREPRLLIV 604
+ T NP V+S+R +G RAV KFAAHTG + +REPRL++V
Sbjct: 67 IATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVV 126
Query: 603 FGP 595
P
Sbjct: 127 TDP 129
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 126 bits (304), Expect = 4e-30
Identities = 59/91 (64%), Positives = 70/91 (76%)
Frame = -2
Query: 599 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 420
DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLAREVLRL
Sbjct: 129 DPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRL 188
Query: 419 RGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
RG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 189 RGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 51.2 bits (117), Expect = 2e-07
Identities = 28/63 (44%), Positives = 33/63 (52%)
Frame = -1
Query: 783 LXTHXNPXXCXVISSRPFGQRAVXKFAAHTGVRXLRDVSHQVXLXTRSKLHFREPRLLIV 604
+ T NP VISSRP+G RAV KFAAHTG + +REPRL+IV
Sbjct: 68 IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIV 127
Query: 603 FGP 595
P
Sbjct: 128 TDP 130
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 35.1 bits (77), Expect = 0.012
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = -2
Query: 641 PSCISVNLVS*LYLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
PS + +L+ + L+P ++ EA ++P I + +TD+ R V IP N S
Sbjct: 175 PSYVFPDLM--VILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCT 232
Query: 461 GLMWWLLAR 435
L+ LL+R
Sbjct: 233 DLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
complex subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 667 TPGXFXNQIQAAFP*TSSLDCIWTLHKTINPLLKL 563
TPG N++Q +S++ W +H INP L
Sbjct: 53 TPGLEWNELQKNIITFNSVEEFWGIHNNINPASSL 87
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,308
Number of Sequences: 5004
Number of extensions: 58688
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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