Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F17
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   120   2e-27
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   3.1  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    28   7.2  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   9.5  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   9.5  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/97 (54%), Positives = 70/97 (72%), Gaps = 5/97 (5%)
 Frame = -2

Query: 599 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRL 420
           DP  DHQ +TEASYV +PVI+  NT+SPL+ +DI +PCN K   SIGLMWW+LARE+L L
Sbjct: 126 DPRIDHQAVTEASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILIL 185

Query: 419 RGVLPRDQRW-----DVVVDLFFYRDPEESEKDEQQA 324
           RG + R   +     +++ DL+FYRDP E+EK+E  A
Sbjct: 186 RGKISRQTGFVLEGKEIMPDLYFYRDPTETEKEETGA 222



 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 24/58 (41%), Positives = 34/58 (58%)
 Frame = -1

Query: 768 NPXXCXVISSRPFGQRAVXKFAAHTGVRXLRDVSHQVXLXTRSKLHFREPRLLIVFGP 595
           NP    V+S+RP+ QRA+ KFAAHTG   +        L  + +  F+EPRLL++  P
Sbjct: 70  NPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQKTFKEPRLLVISDP 127


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 213 CCTRCSSCFWSTPCSRRMVCP 151
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 533 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 426
           CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 561 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 454
           +C+HS    +      K CGHC PM   +HQ  P +  D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 482 TKSSHSIGLMWWLLA 438
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 164  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 259
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,667
Number of Sequences: 27780
Number of extensions: 347173
Number of successful extensions: 961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)