Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F15
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 34 0.16
12_02_1174 - 26696869-26698191 31 1.5
03_01_0023 + 198414-198968 31 1.5
12_01_0979 - 9914779-9915327,9915409-9915536,9915947-9916050,991... 30 2.7
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 30 2.7
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 3.5
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 3.5
02_05_0686 - 30900748-30902167,30903442-30904742 29 4.7
03_01_0515 - 3864796-3865425 29 6.2
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = +3
Query: 573 PPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSXPXPXSX 752
PPP P PP +P P P VP P PP+ S P P
Sbjct: 564 PPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPP 623
Query: 753 XP 758
P
Sbjct: 624 PP 625
>12_02_1174 - 26696869-26698191
Length = 440
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 2/66 (3%)
Frame = +3
Query: 573 PPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXP--XPPLXXPXSXPXPX 746
PPP P PP +P P P + P P PP+ P P P
Sbjct: 156 PPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPT 215
Query: 747 SXXPXP 764
P P
Sbjct: 216 LPPPSP 221
>03_01_0023 + 198414-198968
Length = 184
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/66 (30%), Positives = 22/66 (33%)
Frame = -1
Query: 769 APGXGXXEXGXGXXXGXXRGGXGXRXXXXGTXAXGXXXGERXXAGRXXXAXPPXXXXGGX 590
+PG G G G G RGG G G+ G G G GG
Sbjct: 34 SPGGGGGGGGGGGGGGGGRGGGG--GSGGGSGGGGGSGGGGSGGGGSGGGGSGGGGGGGS 91
Query: 589 XGAGGG 572
G GGG
Sbjct: 92 GGGGGG 97
>12_01_0979 -
9914779-9915327,9915409-9915536,9915947-9916050,
9919832-9919946,9921036-9921528
Length = 462
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +3
Query: 573 PPPAPXXPPXXXXGGWAXXXRPAXXRSP 656
PPP+P PP GW P R+P
Sbjct: 26 PPPSPPPPPQRLRCGWVGRAAPPTRRAP 53
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = +3
Query: 573 PPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSXPXPXSX 752
PPP+P PP A P SP P P P L P P
Sbjct: 47 PPPSPPPPPPLDEETLAQFPSPPTNPSPPPPPPLDADAAAEAAPSPALTSPPPNPSSSPL 106
Query: 753 XP 758
P
Sbjct: 107 PP 108
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/65 (29%), Positives = 19/65 (29%)
Frame = +3
Query: 564 AXXPPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSXPXP 743
A PPP P PP P P P P L P PP S P P
Sbjct: 1136 APPPPPLPEGPPPLPSDS-PPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPP 1194
Query: 744 XSXXP 758
P
Sbjct: 1195 QPAPP 1199
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = +3
Query: 573 PPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPP 713
PPP P P G P P P VP L P PP
Sbjct: 231 PPPPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPP 277
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = +3
Query: 579 PAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSXPXPXSXXP 758
PAP PP A P +P P P P PP P P P P
Sbjct: 311 PAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPP------PPPPAKGPPPPPPPKGPSP 364
Query: 759 XP 764
P
Sbjct: 365 PP 366
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/77 (23%), Positives = 18/77 (23%)
Frame = +3
Query: 576 PPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSXPXPXSXX 755
PP PP P P P P P PPL P P
Sbjct: 42 PPTEASPPPLAPPPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPP 101
Query: 756 PXPGAXXXXPXXXXXXP 806
P P P P
Sbjct: 102 PPPSPPPPSPVKSSPPP 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,117,320
Number of Sequences: 37544
Number of extensions: 127626
Number of successful extensions: 640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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