Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F15
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.26
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 33 0.26
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.4
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 9.6
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = -1
Query: 763 GXGXXEXGXGXXXGXXRGGXGXRXXXXGTXAXGXXXGERXXAGRXXXAXPPXXXXGGXXG 584
G G G G G GG G G G G G PP GG G
Sbjct: 64 GCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCG 123
Query: 583 AGGG 572
GGG
Sbjct: 124 GGGG 127
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 15/47 (31%)
Frame = -1
Query: 712 GGXGXRXXXXGTXAXGXXXGERXXAGRXXXAXPPXXXXGGXXGAGGG 572
GG G G G G G PP GG G GGG
Sbjct: 25 GGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGG 71
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = -1
Query: 763 GXGXXEXGXGXXXGXXRGGXGXRXXXXGTXAXGXXXGERXXAGRXXXAXPPXXXXGGXXG 584
G G G G G GG G G G G A PP GG G
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGG 85
Query: 583 AGGG 572
GGG
Sbjct: 86 GGGG 89
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.1 bits (72), Expect = 0.26
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = -1
Query: 763 GXGXXEXGXGXXXGXXRGGXGXRXXXXGTXAXGXXXGERXXAGRXXXAXPPXXXXGGXXG 584
G G G G G GG G G G G A PP GG G
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGG 85
Query: 583 AGGG 572
GGG
Sbjct: 86 GGGG 89
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +3
Query: 555 GXXAXXPPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSX 734
G + PPPA PP G P SP P P PP P
Sbjct: 251 GSGSPPPPPAAGSPPPPRTGS----PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 306
Query: 735 PXPXSXXPXPGAXXXXPXXXXXXP 806
P P P P A P P
Sbjct: 307 P-PTGSLPPPQAGGSPPPAGTGSP 329
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +3
Query: 555 GXXAXXPPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSX 734
G + PPPA PP G P SP P P PP P
Sbjct: 272 GSGSPPPPPAAGSPPPPRTGS----PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 327
Query: 735 PXPXSXXPXPGAXXXXPXXXXXXP 806
P P P P A P P
Sbjct: 328 P-PTGSLPPPQAGGSPPPAGTGSP 350
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +3
Query: 555 GXXAXXPPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSX 734
G + PPPA PP G P SP P P PP P
Sbjct: 257 GSGSPPPPPAAGSPPPPRTGS----PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 312
Query: 735 PXPXSXXPXPGAXXXXPXXXXXXP 806
P P P P A P P
Sbjct: 313 P-PTGSLPPPQAGGSPPPAGTGSP 335
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/68 (26%), Positives = 19/68 (27%)
Frame = +3
Query: 555 GXXAXXPPPAPXXPPXXXXGGWAXXXRPAXXRSPXXXPXAXVPXXXXLXPXPPLXXPXSX 734
G + PPP P PP P P P P P PP P
Sbjct: 21 GCCSMGPPPCPPPPPPMCA------PPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMC 74
Query: 735 PXPXSXXP 758
P P P
Sbjct: 75 PPPPPPMP 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,189,320
Number of Sequences: 27780
Number of extensions: 80357
Number of successful extensions: 358
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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