Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F14
(821 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.33
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.33
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 0.75
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 31 1.00
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 31 1.00
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.00
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.00
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.00
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 30 1.7
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 1.7
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 30 1.7
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 30 1.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 1.7
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 30 2.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 2.3
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 30 2.3
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 30 2.3
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 3.0
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 29 3.0
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 3.0
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 3.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 4.0
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 29 4.0
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 29 5.3
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 5.3
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 5.3
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 9.3
U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical pr... 28 9.3
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 9.3
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 28 9.3
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 28 9.3
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 28 9.3
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/39 (41%), Positives = 16/39 (41%)
Frame = -1
Query: 617 GXXXXGGXGGXGGARXAXGXGXGGXGXPGPX*XPPIXGG 501
G GG GG GG G G G G P PP GG
Sbjct: 82 GGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGG 120
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = -1
Query: 620 PGXXXXGGXGGXGGARXAXGXGXGGXGXPG---PX*XPPIXGG 501
P GG GG GG G GG G G P PP GG
Sbjct: 21 PSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGG 63
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
P P G G P PP P PG PP P P
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 371
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
P P + P PP P G PG P P PP P
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPP 322
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
P P G G P PP P PG PP P P
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRP 381
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
P P + P PP P G PG P P PP P
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPP 332
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXP--XPPXPPXPXXXR 620
P PP P G PG P PP PP P R
Sbjct: 250 PGPPTRRPPGPPGPPTRRPPGPPGPPTRR 278
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = +3
Query: 501 PXPYGXX-LXGARXPXPPXXXPXGXP----GXPXPPXPPXPXXXRG 623
P +G + A P PP P G P G P PP PP P G
Sbjct: 617 PQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 662
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Frame = +3
Query: 501 PXPYGXX-LXGARXPXPPXXXPXGXP----GXPXPPXPPXPXXXRG 623
P +G + A P PP P G P G P PP PP P G
Sbjct: 443 PQSFGMAPISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPPSGAGG 488
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 528 GARXPXPPXXXPXGXPGXPXPPXPP 602
G P PP P G G P PP PP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = +3
Query: 429 GAXPGXXXXGSXPXFCIXXXXSXXPXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
G P G P I P P G P PP P G G P PP PP P
Sbjct: 724 GGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPP--PPG--GCPPPPPPPPP 777
Query: 609 XXXRG 623
+G
Sbjct: 778 GGFKG 782
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 527 GGPXXXXPRXXTXXPXGXPPPPXPPXXXXXP 619
GGP P G PPPP PP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 528 GARXPXPPXXXPXGXPGXPXPPXPP 602
G P PP P G G P PP PP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = +3
Query: 429 GAXPGXXXXGSXPXFCIXXXXSXXPXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
G P G P I P P G P PP P G G P PP PP P
Sbjct: 724 GGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPP--PPG--GCPPPPPPPPP 777
Query: 609 XXXRG 623
+G
Sbjct: 778 GGFKG 782
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 527 GGPXXXXPRXXTXXPXGXPPPPXPPXXXXXP 619
GGP P G PPPP PP P
Sbjct: 740 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 770
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.00
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 528 GARXPXPPXXXPXGXPGXPXPPXPP 602
G P PP P G G P PP PP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = +3
Query: 429 GAXPGXXXXGSXPXFCIXXXXSXXPXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
G P G P I P P G P PP P G G P PP PP P
Sbjct: 307 GGPPPPPPPGGLPP--ITGGPPPPPPPGGLPPISGGPPPPPP--PPG--GCPPPPPPPPP 360
Query: 609 XXXRG 623
+G
Sbjct: 361 GGFKG 365
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 527 GGPXXXXPRXXTXXPXGXPPPPXPPXXXXXP 619
GGP P G PPPP PP P
Sbjct: 323 GGPPPPPPPGGLPPISGGPPPPPPPPGGCPP 353
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +3
Query: 507 PYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXP 608
P + GAR P P P P PP PP P
Sbjct: 473 PTPVIVDGARPPPSPPALPPALPNPNEPPPPPPP 506
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P P P PP PP P
Sbjct: 501 PLPPIATPSSVPPPPPPPPPPPP 523
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 528 GARXPXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
GAR P P G PG P P PP P G
Sbjct: 243 GARGRLIPVPGPQGAPGKPGPIGPPGPKGNPG 274
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 602 GGXGGXGGARXAXGXGXGGXGXPGPX*XPPIXGG 501
GG GG GG + G G G P P PP GG
Sbjct: 190 GGGGGMGGGGGSGGSGGGSGRFPPP--PPPYGGG 221
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P G P PP PP P
Sbjct: 562 PPPPPPLPQNLSGAPPPPPPPPP 584
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPP 602
P P L GA P PP G P P PP PP
Sbjct: 565 PPPLPQNLSGAPPPPPPPPPMLGGP--PPPPPPP 596
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P G P PP PP P
Sbjct: 234 PPPPPLPPVGAGAPPPPPPPPPP 256
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +3
Query: 441 GXXXXGSXPXFCIXXXXSXXPXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXPXXXR 620
G GS CI + P P G P P G G P PP PP P
Sbjct: 164 GQADSGSSGQACITCP-AGPPGPPGPDGNAGPAGAPGVPGPDGDAGSPPPPGPPGPPGPP 222
Query: 621 G 623
G
Sbjct: 223 G 223
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P G P PP PP P
Sbjct: 220 PPPPPLPPVGAGAPPPPPPPPPP 242
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P G P PP PP P
Sbjct: 220 PPPPPLPPVGAGAPPPPPPPPPP 242
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPP 602
P P P G PG P PP PP
Sbjct: 142 PPPCKPCPQGPPGPPGPPGPP 162
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 561 PXGXPGXPXPPXPPXPXXXRG 623
P G PG P PP PP P G
Sbjct: 166 PAGPPGGPGPPGPPGPEGAPG 186
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 602 GGXGGXGGARXAXGXGXGGXGXPG 531
G GG GG R G G G G PG
Sbjct: 127 GNNGGGGGGRGGGGRGGDGRGPPG 150
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 620 PGXXXXGGXGGXGGARXAXGXGXGGXGXPG 531
PG G GG GG G G GG G G
Sbjct: 149 PGSNGGGDWGGNGGGGRGGGGGRGGGGGGG 178
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPP 602
P P P G PG P PP PP
Sbjct: 142 PPPCKPCPQGPPGPPGPPGPP 162
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 617 GXXXXGGXGGXGGARXAXGXGXGGXGXPGPX*XPP 513
G GG GG GG+ GG G P PP
Sbjct: 269 GGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPP 303
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 617 GXXXXGGXGGXGGARXAXGXGXGGXGXPGPX*XPP 513
G GG GG GG+ GG G P PP
Sbjct: 269 GGGYAGGGGGGGGSSGGYAGSSGGGGYSAPAAAPP 303
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPP 602
P P P G PG P PP PP
Sbjct: 142 PPPWKPCPQGPPGPPGPPGPP 162
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Frame = +3
Query: 492 SXXPXPYGXXLXG----ARXPXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
S P P G G A P P P PG PP PP P G
Sbjct: 217 STYPEPAGPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPG 264
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 531 ARXPXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
A+ P P P G PG P P P P G
Sbjct: 146 AKTPPPCQPCPAGPPGPPGPDGPAGPAGPDG 176
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
P PP P G PG PP PP P G
Sbjct: 229 PGPPG--PPGAPGNDGPPGPPGPKGAPG 254
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P G P PP PP P
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPPP 816
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXP 608
P PP P G P PP PP P
Sbjct: 794 PPPPPPLPPISSGAPPPPPPPPP 816
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
P PP P G PG PP PP P G
Sbjct: 224 PGPPG--PPGAPGNDGPPGPPGPKGAPG 249
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 540 PXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
P PP P G PG PP PP P G
Sbjct: 224 PGPPG--PPGAPGNDGPPGPPGPKGAPG 249
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 623 TPGXXXXGGXGGXGGARXAXGXGXGGXGXPGPX*XPPIXGG 501
TPG G G G G GG G PGP P GG
Sbjct: 200 TPGPAGAPGPQGPAGGPGQPGQS-GGAGAPGPAGAPGAPGG 239
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = -1
Query: 623 TPGXXXXGGXGGXGGARXAXGXGXGGXGXPGPX*XPPIXGG 501
TPG G G G G GG G PGP P GG
Sbjct: 200 TPGPSGAPGPQGPAGGPGQPGQS-GGAGAPGPAGAPGAPGG 239
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
P P G A P P P PG PP PP P G
Sbjct: 224 PGPAGPP-GPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPG 263
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 531 ARXPXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
A+ P P P G PG P P P P G
Sbjct: 145 AKTPPPCKPCPAGPPGPPGPDGPAGPAGPDG 175
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 546 PPXXXPXGXPGXPXPPXPPXP 608
PP P P P PP PP P
Sbjct: 349 PPIISPPAPPPPPPPPPPPPP 369
>U80023-1|AAG24037.1| 180|Caenorhabditis elegans Hypothetical
protein F07C4.7 protein.
Length = 180
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 602 GGXGGXGGARXAXGXGXGGXGXP 534
GG GG GG G G G G P
Sbjct: 140 GGRGGNGGGNNGGGRGGNGGGRP 162
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Frame = +3
Query: 501 PXPYGXXLXGARXPXPPXXXPXGX--PGXPXPPXPPXPXXXRG 623
P P G GA P PP P PG P P PP P G
Sbjct: 134 PGPPGRD--GALLPGPPPKPPCQKCPPGPPGPAGPPGPKGLPG 174
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = -2
Query: 637 PXKXXPRXXXGXGGXGGX-GXPGXPXGXXXGGXGXRAPXXXXPXGXG 500
P + P G G G G PG P G GG G R P G
Sbjct: 156 PGEVGPAGPSGDNGRKGPPGPPGGPGGPGEGGDGGRPGNPGRPGPAG 202
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = +3
Query: 528 GARXPXPPXXXPXGXPGXPXPPXPPXPXXXRG 623
GA P P G PG P P PP P G
Sbjct: 243 GAAGRLIPVPGPQGAPGKPGPIGPPGPKGNPG 274
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 567 GXPGXPXPPXPPXPXXXRG 623
G PG P PP PP P G
Sbjct: 273 GSPGLPGPPGPPGPPGLHG 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,465,004
Number of Sequences: 27780
Number of extensions: 185963
Number of successful extensions: 2662
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2080
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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