Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F11
         (914 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   6.8  
04_04_1542 - 34264994-34265331,34266195-34267029                       29   6.8  
08_01_0059 - 394001-394708                                             28   9.0  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    28   9.0  

>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 581 LPPXPXRPXXPPXPXPXAATPAXXXXAXPR 670
           LPP P RP   P P P    P       PR
Sbjct: 613 LPPPPPRPPGAPPPPPPPGKPGGPPPPPPR 642


>04_04_1542 - 34264994-34265331,34266195-34267029
          Length = 390

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 585 PHXPXXPXALPXPXXXPPRXPRP 653
           P  P  P ALP P   PP  P+P
Sbjct: 215 PTPPPPPLALPLPPPPPPSPPKP 237


>08_01_0059 - 394001-394708
          Length = 235

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 584 PPXPXRPXXPPXPXPXAATPAXXXXAXP 667
           P  P RP  PP P P A  P     A P
Sbjct: 28  PSPPIRPPPPPTPRPYAPPPPSHPLAPP 55


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 584 PPXPXRPXXPPXPXPXAATPAXXXXAXPRXXP 679
           PP P  P  PP P   + TPA      P   P
Sbjct: 91  PPPPLLPTPPPPPASISPTPAPPLPPPPAPAP 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,691,885
Number of Sequences: 37544
Number of extensions: 143931
Number of successful extensions: 1519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)