Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F11
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    29   6.1  

>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
 Frame = -2

Query: 829 GXRGGXXSXXRGXGXXXGXEEXXXGGRAXTRDXXRGXXGXVXGXXXEXXXXXXTRXCXXG 650
           G +GG      G G   G E+   GG+  ++   +G  G   G   +       R    G
Sbjct: 188 GGQGGNQGGGGGRGGNQGGEQGGWGGQGGSQGGSQG--GSQGGWGNQGGQQGGGRGGQQG 245

Query: 649 RGXRGGXXXGXG-RAXGXXGXWG 584
            G  GG   G G    G    WG
Sbjct: 246 PGGWGGGGRGGGWGGWGRGSRWG 268


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 548 PVXXSXLXXXXLPPXPXRPXXPPXPXPXAATPA 646
           PV  + +     PP P  P  PP P P   TP+
Sbjct: 342 PVEITEIPPIISPPAPPPPPPPPPPPPPPQTPS 374


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 584 PPXPXRPXXPPXPXPXAATPA 646
           PP P RP  PP   P   TPA
Sbjct: 50  PPRPNRPPRPPPATPPPTTPA 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,554,990
Number of Sequences: 27780
Number of extensions: 88445
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)