Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F09
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   2.3  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   7.0  
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    25   9.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.3  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 335 ERNNLTWSIMHSLTPNRAAPAPERDRLR 252
           E +N+ WSI+H +     AP  E+  L+
Sbjct: 197 EDSNMAWSIIHKIKTEVVAPISEKKELK 224


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 395 SKLVSRHFEESLRLANQKRGERNNLTWSI 309
           SK+ +   E   RL N+++GE  NLT  I
Sbjct: 158 SKISNSQLEYQQRLINERQGEIENLTQGI 186


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 161 VSSPGDYCSPHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPY--RAYEKKK 9
           + +P D C    R    +A  K ++H G       F P N+  Y  R Y + +
Sbjct: 70  IENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPR 122


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 404  NAASKLVSRHFEES-LRLANQKRGERN 327
            N  SKL  +HFEES  R AN ++  +N
Sbjct: 1986 NVTSKLSQKHFEESHERFANIRQSLKN 2012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,927
Number of Sequences: 5004
Number of extensions: 34322
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)