Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F09
         (786 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0490 + 3878436-3878466,3878559-3879113,3879218-3879777,388...    28   7.3  
03_05_0301 + 22928864-22929787                                         28   7.3  
08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322...    28   9.7  

>12_01_0490 +
           3878436-3878466,3878559-3879113,3879218-3879777,
           3880660-3880965,3881071-3881202,3881623-3881756,
           3881939-3882015,3882084-3882226,3883376-3883633,
           3884085-3884111
          Length = 740

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 80  LDVTNSYLEPWKIQDEHVGSSSLLGMKRVAVWMYVEDGWDA*VDVPE 220
           L+  + Y E W    EHVG+ S +      + + VEDG    + VPE
Sbjct: 432 LEGIDKYKENWNAVAEHVGTKSKIQCLHHFLRLPVEDGLLENIKVPE 478


>03_05_0301 + 22928864-22929787
          Length = 307

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 178 HPHGHPFHPQETTAPHMLVLYLPRLKIRIRHIQA 77
           HPH H  H Q   A HM ++ + R +  +R  QA
Sbjct: 178 HPHHHHHHQQMVNAQHMALVEVARDQDMLRARQA 211


>08_02_1482 -
           27428208-27428514,27428605-27428906,27431176-27432228,
           27432305-27432421,27432510-27432843,27433064-27433188,
           27433408-27433475,27433555-27433636,27433753-27433866,
           27433942-27434042,27434145-27434234,27434615-27434819
          Length = 965

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 659 PELLWKQRYQTPLHPPLHHAITD 591
           PE    +++ +P HPP HH+ +D
Sbjct: 472 PEETKHEKFMSPWHPPSHHSSSD 494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,764
Number of Sequences: 37544
Number of extensions: 237340
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)