Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F09
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.     29   2.9  
CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical ...    29   3.8  

>EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 128 ARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKKK 9
           A L ++KA  K+ + P  PK EP  + + + P R   KKK
Sbjct: 505 AELKAAKAAAKSQTEPEAPKSEPK-SKFKFVPTREKAKKK 543


>CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical
           protein T06A10.1 protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 128 ARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKKK 9
           A L ++KA  K+ + P  PK EP  + + + P R   KKK
Sbjct: 505 AELKAAKAAAKSQTEPEAPKSEPK-SKFKFVPTREKAKKK 543


>AF047661-4|AAC04435.2|  931|Caenorhabditis elegans Hypothetical
           protein M70.1 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 134 PHARLVSSKAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEKKKK 6
           PH  +  S  +DK  +HP   K   N++P  + P +   + K+
Sbjct: 34  PHENIRDSTPRDKLIAHPDRQKRAENYSPPQFKPNKFLHRLKR 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,855,953
Number of Sequences: 27780
Number of extensions: 194183
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)