Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_F07
(902 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 32 0.65
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.6
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein. 30 2.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.6
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o... 30 2.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.4
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 29 6.0
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 31.9 bits (69), Expect = 0.65
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 473 PPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXP 577
PPPP P P P P P P P P P
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRP 100
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXP 550
PPPPP P P P P P P
Sbjct: 74 PPPPPMPCPPPPPPMPRPSCPCMMQRP 100
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/52 (28%), Positives = 15/52 (28%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXPXXPXSXAXIXPXXQXP 625
PPPPP P P P P P P P P P P
Sbjct: 31 PPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTP 559
PPPPP P P P P P P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXPXXPXSXAXIXPXXQXP 625
PPPPP P P P P P P P P A + P P
Sbjct: 758 PPPPP---PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTP 559
PPPPP P P P P P P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXPXXPXSXAXIXPXXQXP 625
PPPPP P P P P P P P P A + P P
Sbjct: 758 PPPPP---PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 806
>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
Length = 1475
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXPXXPXS 592
PPPPP P P P P TP P P S
Sbjct: 841 PPPPPQQLGNPMVGYPGMPLQSPNHLPLTPSPLSAPPKPFS 881
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTP 559
PPPPP P P P P P P P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXPXXPXSXAXIXPXXQXP 625
PPPPP P P P P P P P P A + P P
Sbjct: 341 PPPPP---PPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPP 389
>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
pal-1 protein 3,isoform a protein.
Length = 1475
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXPXTPXXXXXPXXPXS 592
PPPPP P P P P TP P P S
Sbjct: 841 PPPPPQQLGNPMVGYPGMPLQSPNHLPLTPSPLSAPPKPFS 881
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXP-XXPXPXXXPXTPXXXXXPXXP 586
PPPPP P P P P P P P + P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 303
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXP-XXPXPXXXPXTPXXXXXPXXP 586
PPPPP P P P P P P P + P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPP 313
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +2
Query: 470 PPPPPXXXPXPXXXXPXPXXPXPXXXP 550
PPP P P P P P P P P
Sbjct: 153 PPPTPIPTPVPILEPPPPPPPVPPLSP 179
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,223,228
Number of Sequences: 27780
Number of extensions: 69854
Number of successful extensions: 732
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -