Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_F05
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   127   2e-30
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   124   2e-29
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.066
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  127 bits (306), Expect = 2e-30
 Identities = 60/92 (65%), Positives = 70/92 (76%)
 Frame = -2

Query: 597 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 418
           P  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+R
Sbjct: 129 PRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVR 188

Query: 417 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
           G L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 189 GTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 24/43 (55%), Positives = 27/43 (62%)
 Frame = -1

Query: 724 RXXXXFPAHTGXTPIXGRFTPGVFXNQIQGAFREPRXLIVLDP 596
           R    F AHTG T I GRFTPG F N I   +REPR ++V DP
Sbjct: 87  RAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDP 129


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  124 bits (298), Expect = 2e-29
 Identities = 58/90 (64%), Positives = 69/90 (76%)
 Frame = -2

Query: 597 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 418
           P  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 417 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
           G + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 190 GNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 29/55 (52%), Positives = 31/55 (56%)
 Frame = -1

Query: 760 VC*FXXRPXXVKRXXXXFPAHTGXTPIXGRFTPGVFXNQIQGAFREPRXLIVLDP 596
           VC    RP    R    F AHTG T I GRFTPG F N I   +REPR +IV DP
Sbjct: 77  VCVISSRPYG-HRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDP 130


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.066
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 597 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 436
           P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 188 PLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,703
Number of Sequences: 5004
Number of extensions: 52852
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)