Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_E17
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   3.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = +3

Query: 492 RWDSTPRIPAVS*SSPGSRGNRTYGAVGWGTARNAYLPSVPGTRCI 629
           RW S PR PA + S  G    +   +V W      Y   +   R I
Sbjct: 44  RWWSRPREPAQTTSKAGIHRKKVLLSVWWDYKGIVYFELLSPNRTI 89


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 630 KCTLCQERLEDTHFVQC 580
           KC+LCQ R E+     C
Sbjct: 273 KCSLCQRRFEEQGNYSC 289


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 251 STVTISVRSTNLTIDSISLPDDRRNASWTS 162
           +T+T +  +T  T  + + P+  +NAS T+
Sbjct: 659 TTITTTTTTTTTTTTTTTTPNTTQNASATT 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,832
Number of Sequences: 438
Number of extensions: 5491
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)